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Protein Overview: gi|42569389

General Information:
Name(s) found: gi|42569389 [NCBI NR]
Description(s) found:
Found 8 descriptions.
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  • gi|42569389|ref|NP_180333.2| ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1106 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRTTFLEDA ERVKLYNDAR ALFANGDHIK ALEIIEDIIL VHKEDEKSWI LHSEQGEMFN  60
   61 DLAGKAENPY VDFTYMLGSV GCYSKDVLLS RPWAHGLHYL AQESGSVMYY KKCVNVAKQG 120
  121 LSVTFPDASE SFAQLLLENL KNDMKENLET LIKDAESNIA DSKTVELKGL LQQDFEPEVL 180
  181 ESKKRPELVK NEFKGLRSFW LGLDVNVKRD FMKVSIAKLI GFVKGVHHRP GRDALKQILD 240
  241 SAKEDRKWTF WMCRTKCSKK FSSAEECKNH LEKEHAADYK PFSEMDMAKR IGKDWTRKIS 300
  301 LGSWEPVDIA AAVEMIKNRL PEVKAFSYKN GWSKEWPLAE DEERSKLLKE IKFFLVMFCD 360
  361 LKILPCSIRD WMKRYSVTHL KNLNVSEQSL VDSHLVDTPQ SICFLECHKL SYILNLLKRI 420
  421 KCERDDGTNL VRRAVDSILD STRSKEKIDF DPQFSFLLLD RRLLKSNNGP FVDEGEINVF 480
  481 DPNVHYAKAH AQGDDIVSWL TDYNSVEKTF PRPIREHNLD IWVAVLRAVQ FTCRTFGTKY 540
  541 AKKVQLFDYL AAIVAAEKLC KSEYERRRKL KEDQWNSYAS LLCDKCEECF SRKNFLKRKL 600
  601 FLSVVRDILE EASDLTFDLP DIEGCMNLIR EHKSLNDDIV LKSLICLNSV VIFKILLIDS 660
  661 KILLVDNSRI SLLNNLTRLS LFDNRTYILQ LLKPFLLNEI VNMESKAKSD AAVADLLLEE 720
  721 EKKNPKPSPI QSKKKKNTSK KRNSTSMSSP LSKPGEHLEP ETTSPTVEED SMELGDTVNQ 780
  781 EEVMKNMLGE DSQSEHLESA LSEASARYNS ALDMTLKALL NIKILKEDLM HNMQPLQHHL 840
  841 EDQVPSVLQN FFTAFVSEEI KTEGVYSYLL SDLLALLEEV LSMSSGAAEV LVAILEFWHC 900
  901 WKNAERESLV TRLFTLEEKE RMSCRKCRKK PNYPEQSSYG IVMAADSIRD LKCALGNIEF 960
  961 VDILKVIRMD YTMLCDIKNG GCGIANFIHH IISKCPPIFT IVLEWEKSET EKEISETTKA1020
 1021 FEWEIDISRL YAGLEPKTNY RLASMVGCDE KQEHICIAYE KNRWVNLRRD ALAGEDVGNW1080
 1081 KSVVRFCGER KVRPEILFYE VVRSMA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..190] FFAS03 2.15 TETRATRICOPEPTIDE REPEATS OF PROTEIN PHOSPHATASE 5
    2 View Details [191..384] MSA 1.020968 View MSA. No confident structure predictions are available.
    3 View Details [385..618] deduced N/A No confident structure predictions are available.
    4 View Details [619..708] deduced N/A Confident ab initio structure predictions are available.
    5 View Details [709..1106] PSI-BLAST 52.09691 Crystal structure of HAUSP


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle