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Protein Overview: VPS4_ARATH

General Information:
Name(s) found: VPS4_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|3860272|gb|AAC73040.1| putative ATPase [Arabidopsis thaliana] [NCBI NR]
  • pir||F84674 probable AAA-type ATPase [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|20197659|gb|AAM15184.1| putative ATPase [Arabidopsis thaliana] [NCBI NR]
  • gi|20147133|gb|AAM10283.1| F10A12.27/F10A12.27 [Arabidopsis thaliana] [NCBI NR]
  • gi|15226199|ref|NP_180328.1| SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] [NCBI NR]
  • gi|13605797|gb|AAK32884.1|AF367297_1 F10A12.27/F10A12.27 [Arabidopsis thaliana] [NCBI NR]
  • Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 OS=Arabidopsis thaliana GN=SKD1 PE=1 SV=1 [Swiss-Prot]
  • (Q9ZNT0) Putative SKD1 protein (F10A12.27/F10A12.27) (Putative ATPase) [athaliana3702.FASTAC.txt]
  • putative ATPase [Arabidopsis thaliana]gi|3860272|gb|AAC73040.1| putative ATPase [Arabidopsis thaliana]gi|20147133|gb|AAM10283.1| F10A12.27/F10A12.27 [Arabidopsis thaliana]gi|13605797|gb|AAK32884.1| F10A12.27/F10A12.27 [Arabidopsis thaliana]gi|25407909 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 AAA-type ATPase family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: SKD1, VPS4 | SKD1/VPS4; ATP binding | chr2:11788303-11790807 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • F10A12.27/F10A12.27 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative ATPase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SKD1, VPS4, ATSKD1 | AAA-type ATPase family protein | chr2:11781226-11783730 FORWARD LENGTH=435 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • F10A12.27/F10A12.27 OS=Arabidopsis thaliana GN=SKD1 PE=1 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 435 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDA]
    multivesicular body [IDA]
    Biological Process: vesicle-mediated transport [IMP]
    endosome organization [IMP]
    Molecular Function: nucleotide binding [IEA]
    ATP binding [IEA][ISS]
    nucleoside-triphosphatase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT  60
   61 EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE GGGKDGEDPE QSKLRAGLNS 120
  121 AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY 180
  181 LAKAVATEAD STFFSVSSSD LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR 240
  241 GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE 300
  301 AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF 360
  361 FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI TRTDFEKVLA RQRPTVSKSD 420
  421 LDVHERFTQE FGEEG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..105] PSI-BLAST 6.69897 No description for 2v6xA was found.
    2 View Details [106..435] PSI-BLAST 73.0 Crystal Structure of VPS4B


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle