YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: PPR88_ARATH

General Information:
Name(s) found: PPR88_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|75097094|sp|O04590.1|PPR88_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62260, mitochondrial; Flags: Precursor [NCBI NR]
  • pir||B96649 hypothetical protein F19K23.18 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|2160154|gb|AAB60776.1| F19K23.18 gene product [Arabidopsis thaliana] [NCBI NR]
  • gi|15220741|ref|NP_176416.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] [NCBI NR]
  • Pentatricopeptide repeat-containing protein At1g62260, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2 SV=1 [Swiss-Prot]
  • (O04590) F19K23.18 protein [athaliana3702.FASTAC.txt]
  • hypothetical protein F19K23.18 [imported] - Arabidopsis thalianagi|2160154|gb|AAB60776.1| F19K23.18 gene product [Arabidopsis thaliana]gi|15220741|ref|NP_176416.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Pentatricopeptide (PPR) repeat-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23001491-23003461 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • F19K23.18 gene product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: MEF9 | mitochondrial editing factor 9 | chr1:22997826-22999796 REVERSE LENGTH=656 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 656 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: cytidine to uridine editing [IMP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRSRSVLLI FRKVLYQSSC LKCLLCANSF STSVSSSLGF RATNKELNQM IRSGYIAEAR  60
   61 DIFEKLEARN TVTWNTMISG YVKRREMNQA RKLFDVMPKR DVVTWNTMIS GYVSCGGIRF 120
  121 LEEARKLFDE MPSRDSFSWN TMISGYAKNR RIGEALLLFE KMPERNAVSW SAMITGFCQN 180
  181 GEVDSAVVLF RKMPVKDSSP LCALVAGLIK NERLSEAAWV LGQYGSLVSG REDLVYAYNT 240
  241 LIVGYGQRGQ VEAARCLFDQ IPDLCGDDHG GEFRERFCKN VVSWNSMIKA YLKVGDVVSA 300
  301 RLLFDQMKDR DTISWNTMID GYVHVSRMED AFALFSEMPN RDAHSWNMMV SGYASVGNVE 360
  361 LARHYFEKTP EKHTVSWNSI IAAYEKNKDY KEAVDLFIRM NIEGEKPDPH TLTSLLSAST 420
  421 GLVNLRLGMQ MHQIVVKTVI PDVPVHNALI TMYSRCGEIM ESRRIFDEMK LKREVITWNA 480
  481 MIGGYAFHGN ASEALNLFGS MKSNGIYPSH ITFVSVLNAC AHAGLVDEAK AQFVSMMSVY 540
  541 KIEPQMEHYS SLVNVTSGQG QFEEAMYIIT SMPFEPDKTV WGALLDACRI YNNVGLAHVA 600
  601 AEAMSRLEPE SSTPYVLLYN MYADMGLWDE ASQVRMNMES KRIKKERGSS WVDSST

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..656] PSI-BLAST 8.154902 Clathrin D6 Coat


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle