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Protein Overview: NFD2_ARATH

General Information:
Name(s) found: NFD2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9743333|gb|AAF97957.1|AC000103_7 F21J9.11 [Arabidopsis thaliana] [NCBI NR]
  • gi|20334854|gb|AAM16183.1| At1g24450/F21J9_210 [Arabidopsis thaliana] [NCBI NR]
  • gi|15221749|ref|NP_173854.1| NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA binding / ribonuclease III [Arabidopsis thaliana] [NCBI NR]
  • gi|15010594|gb|AAK73956.1| At1g24450/F21J9_210 [Arabidopsis thaliana] [NCBI NR]
  • Protein NUCLEAR FUSION DEFECTIVE 2 OS=Arabidopsis thaliana GN=NFD2 PE=2 SV=1 [Swiss-Prot]
  • (Q9FYL8) F21J9.11 (At1g24450/F21J9_210) [athaliana3702.FASTAC.txt]
  • At1g24450/F21J9_210 [Arabidopsis thaliana]gi|15010594|gb|AAK73956.1| At1g24450/F21J9_210 [Arabidopsis thaliana]gi|15221749|ref|NP_173854.1| ribonuclease III family protein [Arabidopsis thaliana]gi|9743333|gb|AAF97957.1| F21J9.11 [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Ribonuclease III family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: NFD2 | NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA binding / ribonuclease III | chr1:8664189-8665065 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • RNA binding / ribonuclease III [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • F21J9.11 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g24450/F21J9_210 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: NFD2 | Ribonuclease III family protein | chr1:8664201-8665077 FORWARD LENGTH=191 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g24450/F21J9_210 OS=Arabidopsis thaliana GN=NFD2 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 191 amino acids

    Gene Ontology:
    Cellular Component: vacuole [IDA]
    Biological Process: RNA processing [IEA][ISS]
    Molecular Function: ribonuclease III activity [IEA][ISS]
    RNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLRFTLLL LVFVVGIFFS FSSVSHVRAT SEINLRIEPF SSPFATDLAK LQTQIGYKFN  60
   61 NINLLRRAMT HASFSQENNK ALSIFGTHII ETAVSLQFLA KDIDISSKAL GRLISEVSNV 120
  121 ESSCALDGDR LGLGKIIRVS TKTDASNSAI LCTGFRAIFG AIAIDAGTVD EAIKVFWKVH 180
  181 GARAGRLVSM L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..191] PSI-BLAST 34.522879 RNase III endonuclease catalytic domain; RNase III, C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.586992806283081 bayes_pls_golite062009
  • hydrolase activity
    		•  0.16401529741579 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.00837845982391983 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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