YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|15222423, gi|...

General Information:
Name(s) found: gi|25404832 [NCBI NR]
gi|15222423 [NCBI NR]
gi|12325184 [NCBI NR]
Description(s) found:
Found 9 descriptions.
SHOW ALL
  • pir||A96719 hypothetical protein T6C23.9 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15222423|ref|NP_177129.1| zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12325184|gb|AAG52535.1|AC013289_2 putative regulator of chromosome condensation; 48393-44372 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1028 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: NONE FOUND
    Molecular Function: zinc ion binding [IEA][ISS]
    chromatin binding [ISS]
    Ran GTPase binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSLRTSFS ERDVEQAITS LKKGSYLLKY GRRGKPKFCP FQLTSDESAL VWYSGKEEKQ  60
   61 IKLSQVLRIV PGQRTPTFKR YPRPEKEYQS FSLICPDRSL DLICKDKDEA EVWVVGLKSL 120
  121 ITRVKVSKWK TTIKPEITSA ECPTPHARRV SPFVTILDQV IQPSNETSTQ TRLGKVFSDI 180
  181 VAITAPPSNN NQTEASGNLF CPFSPTPANV ENSNLRFSTN DPFRLSLSSA VSTSSHGSYH 240
  241 EDFDALGDVF VWGESISDGV LSGTGNSLNS TTEDALLPKA LESTIVLDAQ NIACGKCHAV 300
  301 LVTKQGEIFS WGEGKGGKLG HGLETDAQKP KFISSVRGLG FKSLACGDFH TCAITQSGDL 360
  361 YSWGDGTHNV DLLGHGNESS CWIPKRVTGD LQGLYVSDVA CGPWHTAVVA SSGQLFTFGD 420
  421 GTFGALGHGD RRSTSVPREV ESLIGLIVTK VACGVWHTAA VVEVTNEASE AEVDSSRGQV 480
  481 FTWGDGEKGQ LGHGDNDTKL LPECVISLTN ENICQVACGH SLTVSRTSRG HVYTMGSTAY 540
  541 GQLGNPTAKG NFPERVEGDI VEASVEEIAC GSYHVAVLTS KSEIYTWGKG LNGQLGHGNV 600
  601 ENKREPAVVG FLREKQVKAI TCGSNFTAVI CVHKWVPGSE HSLCAGCRNP FNFRRKRHNC 660
  661 YNCGLVFCKV CSSRKSLRAA LAPDMNKPYR VCYGCFTKLK KSRESSPSTP TSRTRKLLNM 720
  721 RKSTDVSERD SLTQKFLSVN ARLSSADSSL HYSERRHHRR DLKPEVNNSN VFPSMNGSLQ 780
  781 PVGSPFSKGS TALPKIPKNM MVKIPGSGMS SRTTSPVSVK STSPRRSYEV AAAESKQLKD 840
  841 SFNQDMAGLK EQVEQLASKA HQLEEELEKT KRQLKVVTAM AADEAEENRS AKEVIRSLTT 900
  901 QLKEMAEKQS QKDSISTNSK HTDKEKSETV TQTSNQTHIR SMVSQDSQNE NNLTSKSFAN 960
  961 GHRKQNDKPE KVVQDEPGVY LTLLSLPGGG TELKRVRFSR KQFTEEQAEK WWGENGAKVC1020
 1021 ERHNILVS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..136] PSI-BLAST 17.522879 STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN FROM PHOSPHOLIPASE C DELTA IN COMPLEX WITH INOSITOL TRISPHOSPHATE
    2 View Details [137..198] deduced N/A No confident structure predictions are available.
    3 View Details [199..558] PSI-BLAST 85.0 Regulator of chromosome condensation RCC1
    4 View Details [559..1028] PSI-BLAST 30.0 Heavy meromyosin subfragment

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  3.29080729281876 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.48216092627697 bayes_pls_golite062009
  • actin binding
    		•  2.31347896928633 bayes_pls_golite062009
  • protein binding
    		•  2.12168271674167 bayes_pls_golite062009
  • actin filament binding
    		•  0.636262824984581 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.324566338715835 bayes_pls_golite062009
  • DNA binding
    		•  0.136435190086451 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.118897432176337 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • Ran guanyl-nucleotide exchange factor activity
    		•  1.99390987036621 bayes_pls_golite062009
  • binding
    		•  1.94765972306941 bayes_pls_golite062009
  • GTPase regulator activity
    		•  0.902045197448864 bayes_pls_golite062009
  • nucleoside-triphosphatase regulator activity
    		•  0.881338215451345 bayes_pls_golite062009
  • guanyl-nucleotide exchange factor activity
    		•  0.732530371959803 bayes_pls_golite062009
  • small GTPase regulator activity
    		•  0.676767309840836 bayes_pls_golite062009
  • Ras guanyl-nucleotide exchange factor activity
    		•  0.623383363250545 bayes_pls_golite062009
  • protein binding
    		•  0.568399753749593 bayes_pls_golite062009
  • enzyme regulator activity
    		•  0.510366022767141 bayes_pls_golite062009
  • chromatin binding
    		•  0.22692195000219 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle