YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: ATB20_ARATH

General Information:
Name(s) found: ATB20_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|6714466|gb|AAF26152.1|AC008261_9 putative homeobox-leucine zipper protein, HAT7 [Arabidopsis thaliana] [NCBI NR]
  • gi|15232066|ref|NP_186771.1| ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20); DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|118573193|sp|Q8LAT0.2|ATB20_ARATH RecName: Full=Homeobox-leucine zipper protein ATHB-20; AltName: Full=Homeodomain transcription factor ATHB-20; AltName: Full=HD-ZIP protein ATHB-20 [NCBI NR]
  • gi|116325904|gb|ABJ98553.1| At3g01220 [Arabidopsis thaliana] [NCBI NR]
  • gi|110737682|dbj|BAF00780.1| putative homeobox-leucine zipper protein [Arabidopsis thaliana] [NCBI NR]
  • Homeobox-leucine zipper protein ATHB-20 OS=Arabidopsis thaliana GN=ATHB-20 PE=2 SV=2 [Swiss-Prot]
  • (Q9MAD1) Putative homeobox-leucine zipper protein, HAT7 [athaliana3702.FASTAC.txt]
  • putative homeobox-leucine zipper protein, HAT7 [Arabidopsis thaliana]gi|15232066|ref|NP_186771.1| homeobox-leucine zipper protein, putative / HD-ZIP transcription factor, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Homeobox-leucine zipper protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATHB20 | ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20); DNA binding / transcription factor | chr3:73606-75302 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative homeobox-leucine zipper protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative homeobox-leucine zipper protein, HAT7 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At3g01220 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATHB20, HB20 | homeobox protein 20 | chr3:73599-75295 FORWARD LENGTH=286 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 286 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA][ISS]
    Biological Process: regulation of transcription, DNA-dependent [ISS]
    response to auxin stimulus [IEP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYVFDPTTEA GLRLEMAFPQ HGFMFQQLHE DNSQDQLPSC PPHLFNGGGN YMMNRSMSLM  60
   61 NVQEDHNQTL DEENLSDDGA HTMLGEKKKR LQLEQVKALE KSFELGNKLE PERKIQLAKA 120
  121 LGMQPRQIAI WFQNRRARWK TRQLERDYDS LKKQFESLKS DNASLLAYNK KLLAEVMALK 180
  181 NKECNEGNIV KREAEASWSN NGSTENSSDI NLEMPRETIT THVNTIKDLF PSSIRSSAHD 240
  241 DDHHQNHEIV QEESLCNMFN GIDETTPAGY WAWSDPNHNH HHHQFN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..157] PSI-BLAST 20.69897 Homeobox protein hox-b1
    2 View Details [158..286] MSA 3.057996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle