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Protein Overview: RTL3_ARATH

General Information:
Name(s) found: RTL3_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9759600|dbj|BAB11388.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|15242329|ref|NP_199328.1| RTL3 (RNase three-like protein 3); RNA binding / double-stranded RNA binding / ribonuclease III [Arabidopsis thaliana] [NCBI NR]
  • Ribonuclease 3-like protein 3 OS=Arabidopsis thaliana GN=RTL3 PE=2 SV=1 [Swiss-Prot]
  • (Q9FKF0) Emb|CAB88120.1 [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15242329|ref|NP_199328.1| ribonuclease III family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Ribonuclease III family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: RTL3 | RTL3 (RNASE THREE-LIKE PROTEIN 3); double-stranded RNA binding / ribonuclease III | chr5:18277668-18281573 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • RNA binding / double-stranded RNA binding / ribonuclease III [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: RTL3 | RNAse THREE-like protein 3 | chr5:18260441-18264346 FORWARD LENGTH=957 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 957 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: RNA processing [IEA]
    Molecular Function: RNA binding [IEA]
    ribonuclease III activity [IEA][ISS]
    double-stranded RNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSVEAVEKI LNYSFVNKTL LKEAITQKSP LFDRLEFFGD SILEVAFTNY ICHTYPNLKV  60
   61 KELRDLRTAN VSNEKFARIA VNHNLHHFLL LQNPSLFKKV KNFAEAVRKE DDPVPYGGLV 120
  121 KAPKILADTL ESIAATVFID VNYDVKRLWE IFRSLLEPIY TPDDLLLQPK LPFLTLFRLA 180
  181 DKHGSESTSG IRKMTTSTKI LLRNKDCLDV DLEDVKGKSF EICSTELFSL STVSENSLTD 240
  241 EMSQEEVVID EDSPNVEPED VKGKLFEICY TRKLQIQTGS SGNPLTYEMT TKQMVVDKDS 300
  301 LHVEPVNGRG ELIEICTKNK WPRPIFSVQE EKGPKNEPKF VCSVKIEIPN IEGTFHMKGD 360
  361 IKSKKKQAEN SLAYHMIRAL ESSLVSLVIS NLQKPKSLDE KNNPLLFSSE MDSSVEAVEK 420
  421 ILNYSFVNKT LLKELLTHNN SPLFQGLMFV GESALSLAFT KHLYLTYPML EPKDLSVLRD 480
  481 ANTCHDKYAC VAVKKGIYQS FIGSVPKPEK MTTDFIELMG KEDDPYRVVK APKILVNLLA 540
  541 GVAGAVYIDV KYNVQRLLEI FRVLLEPIYT LDDLRMQLKQ PFLMLFRLAD KHGKQIDFRY 600
  601 SKDGGSRKNI AQVYMDDMFI ASGCAKRIDT AKLLAAEEAI QKLSECMPIE KIIHQDNLDG 660
  661 EVIQTGSSSL LTAFENPLTE EMTQEQMVID EDSLDVEWKL FETEELQIQT GSSSMSTVSE 720
  721 NPLPCEITPT KMVIGEVSPH VELEDVKGKS FEISSTETSS LPIAFENPLT NELTQEQMVI 780
  781 DENSPYVEPV DTKGKLFESC SVESSSLPTT SENPSTYEMT TKQMVVDKDS PHVEPEDEKG 840
  841 KLFEICAKNK WPNPIFSVEE ERGQQNEQKI VCSVKIEIPN IEGTFHIKGD AKPTKKEAEN 900
  901 SSADHMIRAL ESSVMSLVIT NLQMHENLDG KKKNLQMKES LNENKTLLHS TKRRRRL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..234] PSI-BLAST 41.522879 No description for 2eb1A was found.
    2 View Details [235..295] deduced N/A No confident structure predictions are available.
    3 View Details [296..392] Pfam 8.19382 No description for PF00035.17 was found. No confident structure predictions are available.
    4 View Details [393..551] Pfam 18.0 No description for PF00636.18 was found. No confident structure predictions are available.
    5 View Details [552..646] PSI-BLAST 46.39794 No description for 3c4bA was found.
    6 View Details [647..833] deduced N/A No confident structure predictions are available.
    7 View Details [834..957] PSI-BLAST 10.221849 Solution structure of the dsRBD from hypothetical protein BAB26260


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle