| Protein: | RTL3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 957 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTL3_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
344.0 | [0..1] | [649..1266] |
|
|
343.0 | [0..1] | [648..1265] |
|
|
340.0 | [0..17] | [649..1294] |
|
|
334.0 | [0..11] | [649..1281] |
|
|
334.0 | [0..11] | [649..1285] |
|
Region A: Residues: [1-234] |
1 11 21 31 41 51
| | | | | |
1 MNSVEAVEKI LNYSFVNKTL LKEAITQKSP LFDRLEFFGD SILEVAFTNY ICHTYPNLKV 60
61 KELRDLRTAN VSNEKFARIA VNHNLHHFLL LQNPSLFKKV KNFAEAVRKE DDPVPYGGLV 120
121 KAPKILADTL ESIAATVFID VNYDVKRLWE IFRSLLEPIY TPDDLLLQPK LPFLTLFRLA 180
181 DKHGSESTSG IRKMTTSTKI LLRNKDCLDV DLEDVKGKSF EICSTELFSL STVS
|
| Detection Method: |  |
| Confidence: | 41.522879 |
| Match: | 2eb1A |
| Description: | No description for 2eb1A was found. |
|
Region A: Residues: [235-295] |
1 11 21 31 41 51
| | | | | |
1 ENSLTDEMSQ EEVVIDEDSP NVEPEDVKGK LFEICYTRKL QIQTGSSGNP LTYEMTTKQM 60
61 V
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [296-392] |
1 11 21 31 41 51
| | | | | |
1 VDKDSLHVEP VNGRGELIEI CTKNKWPRPI FSVQEEKGPK NEPKFVCSVK IEIPNIEGTF 60
61 HMKGDIKSKK KQAENSLAYH MIRALESSLV SLVISNL
|
| Detection Method: | |
| Confidence: | 8.19382 |
| Match: | PF00035.17 |
| Description: | No description for PF00035.17 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [393-551] |
1 11 21 31 41 51
| | | | | |
1 QKPKSLDEKN NPLLFSSEMD SSVEAVEKIL NYSFVNKTLL KELLTHNNSP LFQGLMFVGE 60
61 SALSLAFTKH LYLTYPMLEP KDLSVLRDAN TCHDKYACVA VKKGIYQSFI GSVPKPEKMT 120
121 TDFIELMGKE DDPYRVVKAP KILVNLLAGV AGAVYIDVK
|
| Detection Method: | |
| Confidence: | 18.0 |
| Match: | PF00636.18 |
| Description: | No description for PF00636.18 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [552-646] |
1 11 21 31 41 51
| | | | | |
1 YNVQRLLEIF RVLLEPIYTL DDLRMQLKQP FLMLFRLADK HGKQIDFRYS KDGGSRKNIA 60
61 QVYMDDMFIA SGCAKRIDTA KLLAAEEAIQ KLSEC
|
| Detection Method: | |
| Confidence: | 46.39794 |
| Match: | 3c4bA |
| Description: | No description for 3c4bA was found. |
|
Region A: Residues: [647-833] |
1 11 21 31 41 51
| | | | | |
1 MPIEKIIHQD NLDGEVIQTG SSSLLTAFEN PLTEEMTQEQ MVIDEDSLDV EWKLFETEEL 60
61 QIQTGSSSMS TVSENPLPCE ITPTKMVIGE VSPHVELEDV KGKSFEISST ETSSLPIAFE 120
121 NPLTNELTQE QMVIDENSPY VEPVDTKGKL FESCSVESSS LPTTSENPST YEMTTKQMVV 180
181 DKDSPHV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [834-957] |
1 11 21 31 41 51
| | | | | |
1 EPEDEKGKLF EICAKNKWPN PIFSVEEERG QQNEQKIVCS VKIEIPNIEG TFHIKGDAKP 60
61 TKKEAENSSA DHMIRALESS VMSLVITNLQ MHENLDGKKK NLQMKESLNE NKTLLHSTKR 120
121 RRRL
|
| Detection Method: | |
| Confidence: | 10.221849 |
| Match: | 1whnA |
| Description: | Solution structure of the dsRBD from hypothetical protein BAB26260 |
Matching Structure (courtesy of the PDB): |
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