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Protein Overview: CHR35_ARATH

General Information:
Name(s) found: CHR35_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|4544390|gb|AAD22300.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • pir||G84539 hypothetical protein At2g16390 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15227191|ref|NP_179232.1| DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1); ATP binding / DNA binding / helicase/ nucleic acid binding [Arabidopsis thaliana] [NCBI NR]
  • Protein CHROMATIN REMODELING 35 OS=Arabidopsis thaliana GN=DRD1 PE=1 SV=1 [Swiss-Prot]
  • (Q9SIW2) At2g16390 protein [athaliana3702.FASTAC.txt]
  • hypothetical protein [Arabidopsis thaliana]gi|25411706|pir||G84539 hypothetical protein At2g16390 [imported] - Arabidopsis thalianagi|15227191|ref|NP_179232.1| SNF2 domain-containing protein / helicase domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 SNF2 domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: CHR35, DRD1 | DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1); ATP binding / DNA binding / helicase/ nucleic acid binding | chr2:7104720-7108178 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • DRD1; ATP binding / ATP-dependent helicase/ DNA binding / helicase/ nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containing protein / helicase domain-containing protein | chr2:7097638-7101182 FORWARD LENGTH=888 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative uncharacterized protein At2g16390 OS=Arabidopsis thaliana GN=DRD1 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 888 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: DNA methylation [IMP]
    production of siRNA involved in RNA interference [IGI]
    Molecular Function: nucleic acid binding [IEA][ISS]
    ATP binding [IEA][ISS]
    DNA binding [IEA][ISS]
    helicase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFVYIVMTG YYKNVHKRKQ NQVDDGPEAK RVKSSAKVID YSNPFAVSNM LEALDSGKFG  60
   61 SVSKELEEIA DMRMDLVKRS IWLYPSLAYT VFEAEKTMDN QQVVEGVINL DDDDDDDTDV 120
  121 EKKALCVVPS SSEIVLLDSD DEDNERQRPM YQFQSTLVQH QKNQGDVTPL IPQCSFEEVD 180
  181 LGRGKEMPSA IKAIVEGQTS RGKVLPIENG VVNEKGVYVG VEEDDSDNES EAADEDLGNI 240
  241 WNEMALSIEC SKDVARETSH KEKADVVEDC EHSFILKDDM GYVCRVCGVI EKSILEIIDV 300
  301 QFTKAKRNTR TYASETRTKR FGESDNELKF SEEGLMIGGL AAHPTHAAEM KPHQIEGFQF 360
  361 LCSNLVADDP GGCIMAHAPG SGKTFMIISF MQSFLAKYPQ AKPLVVLPKG ILPTWKKEFV 420
  421 RWQVEDIPLL DFYSAKAENR AQQLSILKQW MEKKSILFLG YQQFSTIVCD DTTDSLSCQE 480
  481 ILLKVPSILI LDEGHTPRNE DTNLLQSLAQ VQTPRKVVLS GTLYQNHVKE VFNILNLVRP 540
  541 KFLKLDTSKS AVKRILAYTP CDVRGRLTGS NSDMASMFNE TVEHTLQKSE DFTVKIKVIQ 600
  601 DLREMTKKVL HYYKGDFLDE LPGLADFTVV LNLSPKQLNE VKKLRREKRK FKVSAVGSAI 660
  661 YLHPKLKVFS DKSDDVSDTT MDEMVEKLDL NEGVKAKFFL NLINLCDSAG EKLLVFSQYL 720
  721 IPLKFLERLA ALAKGWKLGK EVFVLTGNTS SEQREWSMET FNSSPDAKIF FGSIKACGEG 780
  781 ISLVGASRIL ILDVPLNPSV TRQAIGRAFR PGQKKMVHAY RLIAGSSPEE EDHNTCFKKE 840
  841 VISKMWFEWN EYCGYQNFEV ETIDVDEAGD TFLESPALRE DIRVLYKR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..311] PSI-BLAST 5.221849 RecG, N-terminal domain; RecG "wedge" domain; RecG helicase domain
    2 View Details [312..888] PSI-BLAST 72.30103 Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.141433535514844 bayes_pls_golite062009
    2
    Term Confidence Notes
  • catalytic activity
    		•  0.470983068319171 bayes_pls_golite062009
  • hydrolase activity
    		•  0.0582794297634999 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle