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Protein Overview: gi|12083230, gi|...

General Information:
Name(s) found: gi|3850580 [NCBI NR]
gi|25296173 [NCBI NR]
gi|18379072 [NCBI NR]
gi|12083230 [NCBI NR]
Description(s) found:
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  • gi|3850580|gb|AAC72120.1| Strong similarity to gb|D14550 extracellular dermal glycoprotein (EDGP) precursor from Daucus carota. ESTs gb|84105 and gb|AI100071 come from this gene. [Arabidopsis thaliana] [NCBI NR]
  • pir||G86163 hypothetical protein F15K9.16 - Arabidopsis thaliana [NCBI NR]
  • gi|18379072|ref|NP_563679.1| extracellular dermal glycoprotein, putative / EDGP, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|12083230|gb|AAG48774.1|AF332411_1 unknown protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9ZVS5) F15K9.16 protein (Putative extracellular dermal glycoprotein precursor) [athaliana3702.FASTAC.txt]
  • unknown protein [Arabidopsis thaliana]gi|3850580|gb|AAC72120.1| Strong similarity to gb|D14550 extracellular dermal glycoprotein (EDGP) precursor from Daucus carota. ESTs gb|84105 and gb|AI100071 come from this gene. [Arabidopsis thaliana]gi|18379072|r [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Extracellular dermal glycoprotein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | extracellular dermal glycoprotein, putative / EDGP, putative | chr1:790110-791414 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Strong similarity to gb|D14550 extracellular dermal glycoprotein (EDGP) precursor from Daucus carota. ESTs gb|84105 and gb|AI100071 come from this gene. [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Eukaryotic aspartyl protease family protein | chr1:790110-791414 FORWARD LENGTH=434 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Aspartyl protease-like protein OS=Arabidopsis thaliana GN=F15K9.16 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 434 amino acids

    Gene Ontology:
    Cellular Component: cell wall [IDA]
    plant-type cell wall [IDA]
    Biological Process: response to salt stress [IEP]
    Molecular Function: aspartic-type endopeptidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSRIIIFS VLLLSIFSLS SSAQPSFRPK ALLLPVTKDP STLQYTTVIN QRTPLVPASV  60
   61 VFDLGGREFW VDCDQGYVST TYRSPRCNSA VCSRAGSIAC GTCFSPPRPG CSNNTCGAFP 120
  121 DNSITGWATS GEFALDVVSI QSTNGSNPGR FVKIPNLIFS CGSTSLLKGL AKGAVGMAGM 180
  181 GRHNIGLPLQ FAAAFSFNRK FAVCLTSGRG VAFFGNGPYV FLPGIQISRL QKTPLLINPG 240
  241 TTVFEFSKGE KSPEYFIGVT AIKIVEKTLP IDPTLLKINA STGIGGTKIS SVNPYTVLES 300
  301 SIYKAFTSEF IRQAAARSIK RVASVKPFGA CFSTKNVGVT RLGYAVPEIQ LVLHSKDVVW 360
  361 RIFGANSMVS VSDDVICLGF VDGGVNPGAS VVIGGFQLED NLIEFDLASN KFGFSSTLLG 420
  421 RQTNCANFNF TSTA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..434] PSI-BLAST 32.69897 Crystal Structure of the Triticum aestivum xylanase inhibitor I

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.01508543827677 bayes_pls_golite062009
  • hydrolase activity
    		•  0.77554493777157 bayes_pls_golite062009
  • peptidase activity
    		•  0.68518523369811 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.43925265235199 bayes_pls_golite062009
  • endopeptidase activity
    		•  0.43264884039584 bayes_pls_golite062009
  • aspartic-type endopeptidase activity
    		•  0.30585066730542 bayes_pls_golite062009
  • aspartic-type peptidase activity
    		•  0.30585066730542 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle