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Protein Overview: gi|15221933, gi|...

General Information:
Name(s) found: gi|15221933 [NCBI NR]
gi|12597811 [NCBI NR]
Description(s) found:
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  • gi|15221933|ref|NP_175299.1| auxin-responsive GH3 family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12597811|gb|AAG60122.1|AC073555_6 Nt-gh3 deduced protein, putative [Arabidopsis thaliana] [NCBI NR]
  • (Q9C735) Nt-gh3 deduced protein, putative [athaliana3702.FASTAC.txt]
  • Nt-gh3 deduced protein, putative [Arabidopsis thaliana]gi|15221933|ref|NP_175299.1| auxin-responsive GH3 family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Auxin-responsive GH3 family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | auxin-responsive GH3 family protein | chr1:17999616-18001640 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Nt-gh3 deduced protein, putative [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Auxin-responsive GH3 family protein | chr1:17995948-17997972 REVERSE LENGTH=573 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Auxin-responsive GH3-like protein OS=Arabidopsis thaliana GN=F11I4_15 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 573 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: response to auxin stimulus [ISS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSVELKDL EVLTTNAKQI QDDVLKEILT LNANTEYLKR FLDGSSDKEL FKKNVPVVSY  60
   61 NDVKPYIERV ANGEPSDVIS GGTITRFVQS TGTSGGIHKI FPVNDKYIEN LGYLLAVSSL 120
  121 ITSNDKVDEK GKKMAFLYNR LESKTPSGLA LSSSFTSYFM SDYFKNRSSK CNSEYTSPDQ 180
  181 VILCPDNNQS VYCHLLCGLS QREKVVGVSA TFAHALIKAI NALQIYWKEL SSNIRSGHVS 240
  241 EWITDLDCKN AVSAILGGPD PELADVIEQE CSHKSWEGII TRLWPKAKFI ECIVTGQMAQ 300
  301 YIPTLDFYSN KLPIVSMVYG SSESIFGVNV DPLSKPQDVS YTFLPNISYF EFLPIDHEED 360
  361 MNTIVDLVGV KLGCYYETVV TSYFGLHRYL IGDILQVTGF YNNTPQFRFV RRKNIVLSVN 420
  421 SEATTEQDIL KGLASATLVL ESSNSMLTGF TCYADISSFP GHYVFYWELK AKDVDDVVEL 480
  481 DENVLEECCY ALEESFDALY KRLRSKEGSI GALEIKVVQQ GTFDSLMEYF ISKGGSVAQY 540
  541 KTPMCINSSE TLAVLEDKVI ARFYSQKSPP LNL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..573] FFAS03 3.34 Phenylalanine activating domain of gramicidin synthetase 1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.1635513199224 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle