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Protein Overview: COPA1_ARATH

General Information:
Name(s) found: COPA1_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||T02146 coatomer complex alpha chain homolog F8K4.21 - Arabidopsis thaliana [NCBI NR]
  • gi|3367534|gb|AAC28519.1| Strong similarity to coatamer alpha subunit (HEPCOP) homolog gb|U24105 from Homo sapiens. [Arabidopsis thaliana] [NCBI NR]
  • gi|15220684|ref|NP_176393.1| coatomer protein complex, subunit alpha, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|146286088|sp|Q94A40.2|COPA1_ARATH RecName: Full=Coatomer subunit alpha-1; AltName: Full=Alpha-coat protein 1; Short=Alpha-COP 1 [NCBI NR]
  • Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=2 SV=2 [Swiss-Prot]
  • (O80706) F8K4.21 protein [athaliana3702.FASTAC.txt]
  • Strong similarity to coatamer alpha subunit (HEPCOP) homolog gb|U24105 from Homo sapiens. [Arabidopsis thaliana]gi|15220684|ref|NP_176393.1| coatomer protein complex, subunit alpha, putative [Arabidopsis thaliana]gi|7444289|pir||T02146 coatomer complex [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Coatomer protein complex [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | coatomer protein complex, subunit alpha, putative | chr1:22923479-22927393 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Strong similarity to coatamer alpha subunit (HEPCOP) homolog gb|U24105 from Homo sapiens. [Arabidopsis thaliana] [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • protein transporter/ transporter [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Coatomer, alpha subunit | chr1:22919814-22923728 FORWARD LENGTH=1216 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1216 amino acids

    Gene Ontology:
    Cellular Component: membrane [IDA]
    plasma membrane [IDA]
    CUL4 RING ubiquitin ligase complex [ISS]
    COPI vesicle coat [ISS]
    Biological Process: ER to Golgi vesicle-mediated transport [ISS]
    vesicle-mediated transport [IEA]
    intracellular protein transport [IEA]
    Molecular Function: protein binding [IEA]
    structural molecule activity [IEA]
    transporter activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTKFETKSN RVKGLSFHPK RPWILASLHS GVIQLWDYRM GTLIDRFDEH EGPVRGVHFH  60
   61 NSQPLFVSGG DDYKIKVWNY KNHRCLFTLL GHLDYIRTVQ FHHEYPWIVS ASDDQTIRIW 120
  121 NWQSRTCVSV LTGHNHYVMC ASFHPKEDLV VSASLDQTVR VWDIGALRKK TVSPADDIMR 180
  181 LTQMNSDLFG GVDAIVKYVL EGHDRGVNWA AFHPTLPLIV SGADDRQVKL WRMNETKAWE 240
  241 VDTLRGHMNN VSSVMFHAKQ DIIVSNSEDK SIRVWDATKR TGLQTFRREH DRFWILAVHP 300
  301 EMNLLAAGHD SGMIVFKLER ERPAFALSGD SLFYAKDRFL RYYEYSTQRD SQVIPIRRPG 360
  361 TPSLNQSPRT LSYSPTENAV LICSDLDGGS YELYIIPKDS VGRSDVVQDA KRGTGGSAVF 420
  421 IARNRFAVLE KSTSQVLVKN LKNEVVKKSP LPIPTDAIFY AGTGNLLCRS EDKVVIFDLQ 480
  481 QRLVLGELQT PFVRYVVWSS DMESVALLSK HTIIIASKKL VLQCTLHETI RVKSGAWDDN 540
  541 GVFIYTTLNH IKYCLPNGDS GIIRTLDVPI YITKVSGNTI FCLDRDGKNK AITINATEYI 600
  601 FKLSLLRKRY DHVMSMIKNS QLCGQAMIAY LQQKGFPEVA LHFVEDERIR FNLALESGNI 660
  661 SVAVASATQI NEKDHWYRLG VEALRQGNSG IVEFAYQQTK NFERLSFLYL ITGNLDKLSK 720
  721 LMKIAEVKNN VMGQFHNALY LGDVKERVKI LENAGHLPLA YITASVHGLN DIAERLATEL 780
  781 GDNVPSLPEG KTPSLLMPPT PIMCGGDWPL LRVMKGIFEG GLESADRGGT VDEEDVEGDW 840
  841 GEELDINVDG MENRDIEDIL AAAEAGEEEN DEEGGWGLED LVLPPELDTP KASANARSSV 900
  901 FVTPPQGMPV SQSWSQKSSL AAEQAAAGSF DTAMRLLHRQ LGIKNFTPLK SMFLDLFNGS 960
  961 HSYLRAFSSC PVVPLAIERG WSESSSPNVR SPPALVYDFS QLDEKLKSGY KATTTGKFTE1020
 1021 ALRLFLSILH TIPLVVVETR REVDEVKELI VIVKEYVLGL QMELKRREMK DDPVRQQELA1080
 1081 AYFTHCNLQT PHLRLALLSA MGVCYKAKNL ATASNFARRL LETSPVDSQA KMARQVVQAA1140
 1141 ERNMTDETKL NYDFRNPFVV CGSTYVPIYR GQKDVSCPYC TARFVPNQEG NICTVCDLAV1200
 1201 IGADASGLLC SPSQVR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..163] PSI-BLAST 86.221849 PAF-AH Holoenzyme: Lis1/Alfa2
    2 View Details [164..235] MSA 1.681994 View MSA. No confident structure predictions are available.
    3 View Details [236..319] deduced N/A No confident structure predictions are available.
    4 View Details [320..558] PSI-BLAST 28.69897 Crystal Structure Of The C-Terminal WD40 Domain Of Sif2
    5 View Details [559..798] deduced N/A No confident structure predictions are available.
    6 View Details [799..877] deduced N/A No confident structure predictions are available.
    7 View Details [878..988] deduced N/A No confident structure predictions are available.
    8 View Details [989..1216] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle