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Protein Overview: gi|15238412, gi|...

General Information:
Name(s) found: gi|15238412 [NCBI NR]
gi|10178044 [NCBI NR]
Description(s) found:
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  • gi|15238412|ref|NP_196124.1| peptidase C1A papain family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|10178044|dbj|BAB11527.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • (Q9FF69) Genomic DNA, chromosome 5, P1 clone:MUG13 [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15238412|ref|NP_196124.1| peptidase C1A papain family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Peptidase C1A papain family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | peptidase C1A papain family protein | chr5:1491640-1493458 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • cysteine-type peptidase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Cysteine proteinases superfamily protein | chr5:1491639-1493457 FORWARD LENGTH=299 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Peptidase C1A papain family protein OS=Arabidopsis thaliana GN=At5g05050 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 299 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: proteolysis [IEA][ISS]
    Molecular Function: cysteine-type peptidase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESEDKKFGE EHKSESESNE ESIVAGVGAG RNGGNKSDSD EESAVVGVGA GRKGKNKKSS  60
   61 SSSSSSKKNK SPAKASTKRF TKEDEEWAKD LPSDFTTNCK DWFQYLSGAI KQGKLSVCWA 120
  121 VAIARCVQAS FAIRGIKVEL SPQHLINNIT GKSKEGDIIK FEELSDYLKN QGLVLEEVCK 180
  181 FSGSIKATCP KECSKQTSDD SFYKIKEFNV ITKKDVKEED LLKLVYQRPI VGEHYWLIQN 240
  241 SYGEAWGEKG IGKIIRKCSL KNGESSLFVG AIDIVICMKP SSTSARSGGE REKVVDSRK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..299] FFAS03 9.17 Caricain (protease omega)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.465394995609075 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle