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Protein Overview: VAR3_ARATH

General Information:
Name(s) found: VAR3_ARATH [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
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  • Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana GN=VAR3 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 758 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA]
    Biological Process: chloroplast organization [IMP]
    Molecular Function: zinc ion binding [IEA]
    binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP  60
   61 PLIPTFPIGR FYNHQVRVSA ADFVPSYHNQ QLPEWTELLQ SLSKAGYFSD SGSISGLESE 120
  121 FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY 180
  181 LRSGLQGIGK LMDMEKASTV DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK 240
  241 MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD 300
  301 EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV 360
  361 ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN RYVVSTRKPP LERRLANTEN 420
  421 RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP 480
  481 FVPLPSDMFA KKPKEETQIG LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH 540
  541 KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR 600
  601 PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK 660
  661 IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS ELSEIPDEDF PSIMPMRKGV 720
  721 NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..87] deduced N/A No confident structure predictions are available.
    2 View Details [88..254] MSA 2.090968 View MSA. No confident structure predictions are available.
    3 View Details [255..399] MSA 14.178994 View MSA. No confident structure predictions are available.
    4 View Details [400..463] deduced N/A No confident structure predictions are available.
    5 View Details [464..675] MSA 4.173996 View MSA. No confident structure predictions are available.
    6 View Details [676..758] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.72

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle