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Protein Overview: DEXHC_ARATH

General Information:
Name(s) found: DEXHC_ARATH [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
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  • DExH-box ATP-dependent RNA helicase DExH12 OS=Arabidopsis thaliana GN=EMB1507 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 2171 amino acids

    Gene Ontology:
    Cellular Component: membrane [IDA]
    nucleolus [IDA]
    Biological Process: embryonic development ending in seed dormancy [NAS]
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    ATP binding [IEA]
    ATP-dependent helicase activity [IEA][ISS]
    nucleoside-triphosphatase activity [IEA]
    helicase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLGGGAEA HARFKQYEYR ANSSLVLTTD NRPRDTHEPT GEPETLWGKI DPRSFGDRVA  60
   61 KGRPQELEDK LKKSKKKERD VVDDMVNIRQ SKRRRLREES VLTDTDDAVY QPKTKETRAA 120
  121 YEAMLGLIQK QLGGQPPSIV SGAADEILAV LKNDAFRNPE KKMEIEKLLN KIENHEFDQL 180
  181 VSIGKLITDF QEGGDSGGGR ANDDEGLDDD LGVAVEFEEN EEDDEESDPD MVEEDDDEED 240
  241 DEPTRTGGMQ VDAGINDEDA GDANEGTNLN VQDIDAYWLQ RKISQAYEQQ IDPQQCQVLA 300
  301 EELLKILAEG DDRVVEDKLL MHLQYEKFSL VKFLLRNRLK VVWCTRLARA EDQEERNRIE 360
  361 EEMRGLGPEL TAIVEQLHAT RATAKEREEN LQKSINEEAR RLKDETGGDG GRGRRDVADR 420
  421 DSESGWVKGQ RQMLDLESLA FDQGGLLMAN KKCDLPPGSY RSHGKGYDEV HVPWVSKKVD 480
  481 RNEKLVKITE MPDWAQPAFK GMQQLNRVQS KVYDTALFKA ENILLCAPTG AGKTNVAMLT 540
  541 ILQQLEMNRN TDGTYNHGDY KIVYVAPMKA LVAEVVGNLS NRLKDYGVIV RELSGDQSLT 600
  601 GREIEETQII VTTPEKWDII TRKSGDRTYT QLVRLLIIDE IHLLHDNRGP VLESIVARTL 660
  661 RQIETTKENI RLVGLSATLP NYEDVALFLR VDLKKGLFKF DRSYRPVPLH QQYIGISVKK 720
  721 PLQRFQLMND LCYQKVLAGA GKHQVLIFVH SRKETSKTAR AIRDTAMAND TLSRFLKEDS 780
  781 VTRDVLHSHE DIVKNSDLKD ILPYGFAIHH AGLSRGDREI VETLFSQGHV QVLVSTATLA 840
  841 WGVNLPAHTV IIKGTQVYNP EKGAWMELSP LDVMQMLGRA GRPQYDQHGE GIIITGYSEL 900
  901 QYYLSLMNEQ LPIESQFISK LADQLNAEIV LGTVQNAREA CHWLGYTYLY IRMVRNPTLY 960
  961 GLAPDALAKD VVLEERRADL IHSAATILDK NNLVKYDRKS GYFQVTDLGR IASYYYITHG1020
 1021 TIATYNEHLK PTMGDIDLYR LFSLSDEFKY VTVRQDEKME LAKLLDRVPI PIKETLEEPS1080
 1081 AKINVLLQAY ISQLKLEGLS LTSDMVYITQ SAGRLVRALY EIVLKRGWAQ LAEKALNLSK1140
 1141 MVGKRMWSVQ TPLRQFHGLS NDILMQLEKK DLVWERYYDL SAQELGELIR SPKMGKPLHK1200
 1201 FIHQFPKVTL SAHVQPITRT VLNVELTVTP DFLWDEKIHK YVEPFWIIVE DNDGEKILHH1260
 1261 EYFLLKKQYI DEDHTLHFTV PIFEPLPPQY FVRVVSDKWL GSETVLPVSF RHLILPEKYP1320
 1321 PPTELLDLQP LPVTALRNPN YEILYQDFKH FNPVQTQVFT VLYNTNDNVL VAAPTGSGKT1380
 1381 ICAEFAILRN HHEGPDATMR VVYIAPLEAI AKEQFRIWEG KFGKGLGLRV VELTGETALD1440
 1441 LKLLEKGQII ISTPEKWDAL SRRWKQRKYV QQVSLFIVDE LHLIGGQHGP VLEVIVSRMR1500
 1501 YISSQVINKI RIVALSTSLA NAKDLGEWIG ASSHGLFNFP PGVRPVPLEI HIQGVDISSF1560
 1561 EARMQAMTKP TYTAIVQHAK NKKPAIVFVP TRKHVRLTAV DLMAYSHMDN PQSPDFLLGK1620
 1621 LEELDPFVEQ IREETLKETL CHGIGYLHEG LSSLDQEIVT QLFEAGRIQV CVMSSSLCWG1680
 1681 TPLTAHLVVV MGTQYYDGRE NSHSDYPVPD LLQMMGRASR PLLDNAGKCV IFCHAPRKEY1740
 1741 YKKFLYEAFP VESQLQHFLH DNFNAEVVAG VIENKQDAVD YLTWTFMYRR LPQNPNYYNL1800
 1801 QGVSHRHLSD HLSELVENTL SDLEASKCIE VEDEMELSPL NLGMIASYYY ISYTTIERFS1860
 1861 SLLSSKTKMK GLLEILTSAS EYDMIPIRPG EEDTVRRLIN HQRFSFENPK CTDPHVKANA1920
 1921 LLQAHFSRQN IGGNLAMDQR DVLLSATRLL QAMVDVISSN GWLNLALLAM EVSQMVTQGM1980
 1981 WERDSMLLQL PHFTKDLAKR CQENPGKNIE TVFDLVEMED EERQELLKMS DAQLLDIARF2040
 2041 CNRFPNIDLT YEIVGSEEVN PGKEVTLQVM LERDMEGRTE VGPVDSLRYP KTKEEGWWLV2100
 2101 VGDTKTNQLL AIKRVSLQRK VKVKLDFTAP SEPGEKSYTL YFMCDSYLGC DQEYSFSVDV2160
 2161 KGSGAGDRME E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..62] deduced N/A No confident structure predictions are available.
    2 View Details [63..406] PSI-BLAST 8.39794 Heavy meromyosin subfragment
    3 View Details [407..490] deduced N/A No confident structure predictions are available.
    4 View Details [491..954] PSI-BLAST 9.39794 Helicase-like "domain" of reverse gyrase; Topoisomerase "domain" of reverse gyrase
    5 View Details [955..1149] deduced N/A No confident structure predictions are available.
    6 View Details [1150..1286] deduced N/A No confident structure predictions are available.
    7 View Details [1287..1328] PSI-BLAST 84.30103 No description for 2db3A was found.
    8 View Details [1329..2044] PSI-BLAST 88.522879 No description for 2va8A was found.
    9 View Details [2045..2171] PSI-BLAST 87.221849 No description for 2q0zX was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle