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Protein Overview: HFA4C_ARATH

General Information:
Name(s) found: HFA4C_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9758674|dbj|BAB09213.1| heat shock transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|75309157|sp|Q9FK72.1|HFA4C_ARATH RecName: Full=Heat stress transcription factor A-4c; Short=AtHsfA4c; AltName: Full=AtHsf-20; AltName: Full=Protein ROOT HANDEDNESS 1 [NCBI NR]
  • gi|53828593|gb|AAU94406.1| At5g45710 [Arabidopsis thaliana] [NCBI NR]
  • gi|50253438|gb|AAT71921.1| At5g45710 [Arabidopsis thaliana] [NCBI NR]
  • gi|33771680|gb|AAQ54332.1| heat shock factor RHA1 [Arabidopsis thaliana] [NCBI NR]
  • gi|15242478|ref|NP_199383.1| RHA1 (ROOT HANDEDNESS 1); DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|110738010|dbj|BAF00940.1| heat shock transcription factor [Arabidopsis thaliana] [NCBI NR]
  • Heat stress transcription factor A-4c OS=Arabidopsis thaliana GN=HSFA4C PE=2 SV=1 [Swiss-Prot]
  • (Q9FK72) Heat shock transcription factor [athaliana3702.FASTAC.txt]
  • heat shock factor RHA1 [Arabidopsis thaliana]gi|53828593|gb|AAU94406.1| At5g45710 [Arabidopsis thaliana]gi|9758674|dbj|BAB09213.1| heat shock transcription factor [Arabidopsis thaliana]gi|50253438|gb|AAT71921.1| At5g45710 [Arabidopsis thaliana]gi|1524 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Heat shock transcription factor family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: HSFA4C, RHA1, AT-HSFA4C | AT-HSFA4C (Arabidopsis thaliana heat shock transcription factor A4C); DNA binding / transcription factor | chr5:18558803-18559933 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • heat shock factor RHA1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • heat shock transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g45710 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT-HSFA4C; DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: AT-HSFA4C, RHA1, HSFA4C | winged-helix DNA-binding transcription factor family protein | chr5:18541576-18542706 FORWARD LENGTH=345 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 345 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: root development [IMP]
    response to heat [IEP]
    positive gravitropism [IMP]
    fruit morphogenesis [IMP]
    response to auxin stimulus [IMP]
    lateral root development [IMP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDENNGGSSS LPPFLTKTYE MVDDSSSDSV VAWSENNKSF IVKNPAEFSR DLLPRFFKHK  60
   61 NFSSFIRQLN TYGFRKVDPE KWEFLNDDFV RGRPYLMKNI HRRKPVHSHS LVNLQAQNPL 120
  121 TESERRSMED QIERLKNEKE GLLAELQNQE QERKEFELQV TTLKDRLQHM EQHQKSIVAY 180
  181 VSQVLGKPGL SLNLENHERR KRRFQENSLP PSSSHIEQVE KLESSLTFWE NLVSESCEKS 240
  241 GLQSSSMDHD AAESSLSIGD TRPKSSKIDM NSEPPVTVTA PAPKTGVNDD FWEQCLTENP 300
  301 GSTEQQEVQS ERRDVGNDNN GNKIGNQRTY WWNSGNVNNI TEKAS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..91] PSI-BLAST 33.0 SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN OF DROSOPHILA HEAT SHOCK TRANSCRIPTION FACTOR
    2 View Details [92..345] FFAS03 1.46 Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.835523092977445 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.4843036104266 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.37117756729668 bayes_pls_golite062009
  • DNA binding
    		•  0.3118855114645 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle