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Protein Overview: gi|6648194, gi|2...

General Information:
Name(s) found: gi|6648194 [NCBI NR]
gi|21593171 [NCBI NR]
gi|20465449 [NCBI NR]
gi|17529010 [NCBI NR]
gi|15231874 [NCBI NR]
Description(s) found:
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  • gi|6648194|gb|AAF21192.1|AC013483_16 polygalacturonase (PGA3) [Arabidopsis thaliana] [NCBI NR]
  • gi|21593171|gb|AAM65120.1| polygalacturonase PGA3 [Arabidopsis thaliana] [NCBI NR]
  • gi|20465449|gb|AAM20184.1| putative polygalacturonase (PGA3) [Arabidopsis thaliana] [NCBI NR]
  • gi|17529010|gb|AAL38715.1| putative polygalacturonase(PGA3 [Arabidopsis thaliana] [NCBI NR]
  • gi|15231874|ref|NP_187439.1| polygalacturonase 3 (PGA3) / pectinase [Arabidopsis thaliana] [NCBI NR]
  • (Q9SFD2) Putative polygalacturonase (Polygalacturonase PGA3) [athaliana3702.FASTAC.txt]
  • polygalacturonase (PGA3) [Arabidopsis thaliana]gi|21593171|gb|AAM65120.1| polygalacturonase PGA3 [Arabidopsis thaliana]gi|20465449|gb|AAM20184.1| putative polygalacturonase (PGA3) [Arabidopsis thaliana]gi|17529010|gb|AAL38715.1| putative polygalacturon [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Polygalacturonase 3 (PGA3) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | polygalacturonase 3 (PGA3) / pectinase | chr3:2496603-2498034 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative polygalacturonase (PGA3) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative polygalacturonase(PGA3 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • polygalacturonase (PGA3) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • polygalacturonase PGA3 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pectin lyase-like superfamily protein | chr3:2496597-2498028 REVERSE LENGTH=391 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Polygalacturonase (PGA3) OS=Arabidopsis thaliana GN=F17A17.16 PE=2 SV=1 [ARATH-contam.fasta]
  • Polygalacturonase OS=Arabidopsis thaliana GN=F17A17.16 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 391 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGYFGVSTI FIICLLGISA NAEVFTIGSS SGSDITQALL KAFTSACQSS SPSKVVIPKG  60
   61 EFKLGEIEMR GPCKAPIEVT LQGTVKADGN AIQGKEKWVV FGNIDGFKLN GGGAFDGEGN 120
  121 AAWRVNNCHK TFECKKLPIS IRFDFILNSE IRDISSIDAK NFHINVLGAK NMTMNNIKIV 180
  181 APEDSPNTDG IHLGRSDGVK ILNSFISTGD DCISVGDGMK NLHVEKVTCG PGHGISVGSL 240
  241 GRYGHEQDVS GIKVINCTLQ ETDNGLRIKT WPSAACSTTA SDIHFEDIIL KDVSNPILID 300
  301 QEYCPWNQCN KQKASTIKLV NISFKNIRGT SGNKDAVKLL CSKGYPCQNV EIGDIDIKYN 360
  361 GADGPATFHC SNVSPKILGS QSPKACSAPA A

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..391] PSI-BLAST 41.39794 RHAMNOGALACTURONASE A FROM ASPERGILLUS ACULEATUS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • polygalacturonase activity
    		•  3.63113788404352 bayes_pls_golite062009
  • catalytic activity
    		•  0.67288476528593 bayes_pls_golite062009
  • hydrolase activity
    		•  0.329563804802467 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle