YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: GPDL7_ARATH

General Information:
Name(s) found: GPDL7_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|8777318|dbj|BAA96908.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|15242971|ref|NP_200625.1| SVL5 (SHV3-LIKE 5); glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase [Arabidopsis thaliana] [NCBI NR]
  • Glycerophosphodiester phosphodiesterase GDPDL7 OS=Arabidopsis thaliana GN=GDPDL7 PE=2 SV=1 [Swiss-Prot]
  • (Q9LVN0) Genomic DNA, chromosome 5, P1 clone:MCK7 [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15242971|ref|NP_200625.1| glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Glycerophosphoryl diester phosphodiesterase family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | glycerophosphoryl diester phosphodiesterase family protein | chr5:23557487-23560318 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • glycerophosphodiester phosphodiesterase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SVL5 | SHV3-like 5 | chr5:23540261-23543092 REVERSE LENGTH=750 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Protein SEUSS-like 5 OS=Arabidopsis thaliana GN=SVL5 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 750 amino acids

    Gene Ontology:
    Cellular Component: anchored to membrane [TAS]
    Biological Process: glycerol metabolic process [IEA][ISS]
    lipid metabolic process [IEA]
    Molecular Function: glycerophosphodiester phosphodiesterase activity [IEA][ISS]
    phosphoric diester hydrolase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRFIIFFSL FIHLCVAAPQ TPAAAAAVPA KKWLTLNGQE PAVVARGGFS GLFPESSASA  60
   61 NDLAIGTSSP GLTMLCNLQM TKDGVGLCLS DIILDNATTI SSVFPKAQKT YKVNGQDLKG 120
  121 WFVLDYDADT IFNNVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME 180
  181 HKLSPAEYLR SLQFRGINVI SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY 240
  241 SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR 300
  301 TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH 360
  361 NGASGDYPGC TDLAYQKAVD DGADVIDCSV QMSKDGIAFC HDAADLTAST TAMTIFMSRA 420
  421 TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF ITLADFLDFS 480
  481 KAKAVTGVMI NIENAAYLAS KKGLGVVDAV KSALAKSTLD KQSTQKVLIQ SDDSSVLASF 540
  541 EAVPPYTRVL SIDKEIGGAP KPSVDEIKKY AEAVNLLRTS LVTVSQSFTT GKTNVVEEMH 600
  601 KGNISVYVSV LRNEYISVAF DYFSDPTIEL ATFISGSGVD GVITEFPATA TRYLKSPCSD 660
  661 LNKEQPYAIL PAEAGGLVVV ADKEAQPPAS APNPPLEAKD VIDPPLPPVA NLAASNATGG 720
  721 AQSHPPPASG TVANAANLGL SLLAMLALGV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..332] FFAS03 6.96 Crystal structure of periplasmic glycerophosphodiester phosphodiesterase from Escherichia coli
    2 View Details [333..662] PSI-BLAST 64.0 Crystal structure of periplasmic glycerophosphodiester phosphodiesterase from Escherichia coli
    3 View Details [663..750] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle