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Protein Overview: UBP1_ARATH

General Information:
Name(s) found: UBP1_ARATH [Swiss-Prot]
Description(s) found:
Found 13 descriptions.
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  • Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana GN=UBP1 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1083 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: ubiquitin-dependent protein catabolic process [IEA]
    Molecular Function: ubiquitin-specific protease activity [ISS]
    zinc ion binding [IEA]
    ubiquitin thiolesterase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFAATVSEK QSEQSVEVTE EFAVTMTEKR SCVHFDKYVD LDKLLKIIKS YQQIKCGECN  60
   61 ERVHVKRGSR WGASNRRDWY SSSDQNCARN AIWLCLECGY YVCGDVGLPT EAQSHVMGHN 120
  121 RLTRHRLVIQ CKNPQLRWCF SCQSLLPFDN EENGEKKDLL LEVVKLIRER SPNTYSASFE 180
  181 TEFSCSGSIY GGIEARDGYA VRGLVNLGNT CFFNSVMQNL LSLDQLREHF LKEDLSVSGP 240
  241 LVSSLKELFA ESNSEASVFR NEINPRDLFF SVCSQAPQFR GYQQHDSHEL LRCLLDGLSI 300
  301 EESSLRKKLG VSDSNDSSTY QKPTLIDSVF GGEISSTVSC LECGHFSKVY EPFMDLSLPV 360
  361 PSMKLPPKKQ QILSQAKEVL KNGAVSKDSE VVSAKPASDH NSTVPLFPSD HKIQSRPETS 420
  421 DNETDLVLLS DVSDTAPSTE AKGVNQILVG STETLMHDND RTGKTVPDKE DVRATQSNEE 480
  481 TSASGISAVI DEAQVCGCPD LEQSSSSANQ GADEELALMV ADSQVLYMPY KDHLFYDDYM 540
  541 VAEASSSFVS GDHEPKKDYF DFSSFLDEPE IREGPVFRPL SKSEVYEAGF KADCSDDKTV 600
  601 SAGKGEASSS FISSDHEQNI DYVDFSSFFD EPEISERPFF RPLSKSEVSE AGFKADCSDD 660
  661 KTVSAGKGEA SSSFVSSDHE QNIDYVDFSS FFDEPEISER PFFRPLSKSE VSEAGFMAVS 720
  721 GNDKTVRAGK GETFSSFMSG DNERNIDYVE FTNRIFDDRG TSERPVFGPP SKAKVSEAGF 780
  781 VAVSSDSDPA VLDESDSPVS VDRCLAQFTK HEILSEDNAW HCENCSKNLK LQRLREKRRT 840
  841 KEGLSNRWVN ENGASSAFDE CRDSSLNQSC IDLENGYKAA PPITKLPNCK EEESAIDDGF 900
  901 VGEENTKQAP ITSVTETPLL GGETISSQPA SDNECENWED LAVDSEEVIV KRDARKKVLI 960
  961 NKAPPVLTIH LKRFSQDARG RVSKLSGHVD FQEFIDLSKY MDTRCSEEDE PVYRLAGLVE1020
 1021 HLGAMSRGHY VSYIRGGHKE RRDSDTKEPN SSIWYHASDS QVRPASLEEV LRSEAYILFY1080
 1081 ERI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..175] PSI-BLAST 19.30103 No description for 2g43A was found.
    2 View Details [176..527] PSI-BLAST 59.522879 No description for 2ibiA was found.
    3 View Details [528..1083] FFAS03 5.63 Crystal structure of HAUSP


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle