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Protein Overview: gi|42565079, gi|...

General Information:
Name(s) found: gi|9280234 [NCBI NR]
gi|42565079 [NCBI NR]
Description(s) found:
Found 10 descriptions.
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  • gi|9280234|dbj|BAB01724.1| RNA methyltransferase-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|42565079|ref|NP_188767.2| RNA methyltransferase family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 554 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA processing [IEA]
    Molecular Function: RNA methyltransferase activity [IEA][ISS]
    RNA binding [IEA]
    methyltransferase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAATPAHGL RYVVVPTRSW LHRFRCCSSS LAPLSPSEFS GGNKAQKKLN DENNTNVSNE  60
   61 KTAPYYPKRG ETVELVCESL GFKGKGICKV DGTGYVVMCD RALPGERFLG RVTRRKGSYA 120
  121 EVTKMKTISP HKDLVEAPCE YASYCGGCKT QNLSYEAQLR AKEEQVHELI RHVGRFSDNN 180
  181 PGLEIVLKPI VACDIQFHYR NKMEFSFGPQ RWLPIEMLNE RQDGPKNFAL GLHAPGFFDK 240
  241 VLNVDKCLLQ SEPGNLVLAA VQDCWRDPEL SLSPYDCRSH VGFLKHLMLR TGRNVETGSL 300
  301 ELMVNFVTSS YKPELLKPLV DRISSIPQVV SIMNNVNSSV GNTSVGEKEY TLYGKDTITE 360
  361 VLRGLTFQIS ANSFFQTNTH QAEVLYKLIE ESAGLKGDGS EVVLDLFCGT GTIGLTLARR 420
  421 AKHVYGYEVV PQAITDAHKN AQINGIENAT FIQGDLNKIG EDFGNNFPKP DIVISDPNRP 480
  481 GMHMKLIKFL LKLKSPRIIY VSCNPATCAR DLDYLCHGVE EKNLKGCYKL MSVQPVDMFP 540
  541 HTPHIECVCL LELA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..554] PSI-BLAST 82.69897 Crystal Structure of RumA, the iron-sulfur cluster containing E. coli 23S Ribosomal RNA 5-Methyluridine Methyltransferase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • methyltransferase activity
    		•  4.15445027778357 bayes_pls_golite062009
  • rRNA methyltransferase activity
    		•  4.09362182773099 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  4.07153733729662 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  3.39429041855776 bayes_pls_golite062009
  • RNA methyltransferase activity
    		•  3.07428840534971 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  3.0539218951403 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  3.01384869242051 bayes_pls_golite062009
  • transferase activity
    		•  2.22303238506686 bayes_pls_golite062009
  • tRNA methyltransferase activity
    		•  1.95598912777096 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  1.90505369820945 bayes_pls_golite062009
  • rRNA (adenine) methyltransferase activity
    		•  1.83964463328968 bayes_pls_golite062009
  • rRNA (adenine-N6,N6-)-dimethyltransferase activity
    		•  1.75675289134467 bayes_pls_golite062009
  • DNA-methyltransferase activity
    		•  1.63765148226572 bayes_pls_golite062009
  • arginine N-methyltransferase activity
    		•  1.6030970825293 bayes_pls_golite062009
  • protein-arginine N-methyltransferase activity
    		•  1.6030970825293 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  1.33037840597912 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  1.33037840597912 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  1.32901977260571 bayes_pls_golite062009
  • catalytic activity
    		•  1.25333584501255 bayes_pls_golite062009
  • rRNA (guanine) methyltransferase activity
    		•  1.10713374933008 bayes_pls_golite062009
  • histone-arginine N-methyltransferase activity
    		•  1.05897361334523 bayes_pls_golite062009
  • site-specific DNA-methyltransferase (adenine-specific) activity
    		•  0.703178429468566 bayes_pls_golite062009
  • protein-arginine omega-N monomethyltransferase activity
    		•  0.639377525568296 bayes_pls_golite062009
  • ligase activity
    		•  0.477367693545833 bayes_pls_golite062009
  • O-methyltransferase activity
    		•  0.250946859465502 bayes_pls_golite062009
  • tRNA (guanine) methyltransferase activity
    		•  0.203168546434167 bayes_pls_golite062009
  • protein-arginine omega-N asymmetric methyltransferase activity
    		•  0.130104080746388 bayes_pls_golite062009
  • histone methyltransferase activity (H4-R3 specific)
    		•  0.130042730841119 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.00505175337890207 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.84

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle