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Protein Overview: PGLR6_ARATH

General Information:
Name(s) found: PGLR6_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75318034|sp|O22818.1|PGLR6_ARATH RecName: Full=Probable polygalacturonase At2g43860; Short=PG; AltName: Full=Pectinase At2g43860; Flags: Precursor [NCBI NR]
  • gi|67633604|gb|AAY78726.1| putative polygalacturonase/pectinase [Arabidopsis thaliana] [NCBI NR]
  • pir||D84871 probable polygalacturonase [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|2281084|gb|AAB64020.1| putative polygalacturonase [Arabidopsis thaliana] [NCBI NR]
  • gi|15224377|ref|NP_181914.1| polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] [NCBI NR]
  • Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1 [Swiss-Prot]
  • (O22818) Putative polygalacturonase [athaliana3702.FASTAC.txt]
  • putative polygalacturonase [Arabidopsis thaliana]gi|15224377|ref|NP_181914.1| polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana]gi|25289362|pir||D84871 probable polygalacturonase [imported] - Arabidopsis thaliana [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Polygalacturonase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | polygalacturonase, putative / pectinase, putative | chr2:18170022-18171505 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative polygalacturonase/pectinase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pectin lyase-like superfamily protein | chr2:18162945-18164428 REVERSE LENGTH=405 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 405 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYNTSCLIL PLALIILDFT LISSLAHPIP STLNVLSYGA KPDGSKDSTK AFLAAWDVAC  60
   61 ASANPTTIIV PKGRFLVGNL VFHGNECKQA PISIRIAGSI VAPEDFRIIA SSKHWIWFED 120
  121 VTDVSIYGGI LDAQGTSLWK CKNNGGHNCP TGAKSLVFSG SNNIKISGLT SINSQKFHIV 180
  181 IDNSNNVNID GVKVSADENS PNTDGIHVES SHSVHITNSR IGTGDDCISI GPGSTNVFIQ 240
  241 TIRCGPGHGI SIGSLGRAEE EQGVDNVTVS NVDFMGTNNG VRIKTWGKDS NSFARNIVFQ 300
  301 HINMKMVKNP IIIDQHYCLH KPCPKQESGV KVSNVRYEDI HGTSNTEVAV LLDCSKEKPC 360
  361 TGIVMDDVNL VSVHRPAQAS CDNANGSAND VVPFTPCLKR EIIIT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..405] PSI-BLAST 43.39794 RHAMNOGALACTURONASE A FROM ASPERGILLUS ACULEATUS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • polygalacturonase activity
    		•  3.63113788404352 bayes_pls_golite062009
  • catalytic activity
    		•  0.67288476528593 bayes_pls_golite062009
  • hydrolase activity
    		•  0.329563804802467 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle