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Protein Overview: NCBP1_ARATH

General Information:
Name(s) found: NCBP1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|8515771|gb|AAF76167.1|AF268377_1 nuclear cap-binding protein CBP80 [Arabidopsis thaliana] [NCBI NR]
  • gi|20198048|gb|AAD22677.2| putative cap-binding protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18397263|ref|NP_565356.1| ABH1 (ABA HYPERSENSITIVE 1); RNA cap binding [Arabidopsis thaliana] [NCBI NR]
  • gi|15192738|gb|AAK91588.1|AF272891_1 mRNA cap binding protein [Arabidopsis thaliana] [NCBI NR]
  • Nuclear cap-binding protein subunit 1 OS=Arabidopsis thaliana GN=ABH1 PE=1 SV=2 [Swiss-Prot]
  • (Q9SIU2) Putative cap-binding protein (Nuclear cap-binding protein CBP80) (mRNA cap binding protein) [athaliana3702.FASTAC.txt]
  • nuclear cap-binding protein CBP80 [Arabidopsis thaliana]gi|20198048|gb|AAD22677.2| putative cap-binding protein [Arabidopsis thaliana]gi|15192738|gb|AAK91588.1| mRNA cap binding protein [Arabidopsis thaliana]gi|18397263|ref|NP_565356.1| mRNA cap-bindin [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 MRNA cap-binding protein (ABH1) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: CBP80, ABH1 | ABH1 (ABA HYPERSENSITIVE 1) | chr2:5644135-5649895 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative cap-binding protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • mRNA cap binding protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • nuclear cap-binding protein CBP80 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ABH1 (ABA HYPERSENSITIVE 1) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ENS, ABH1, CBP80, ATCBP80 | ARM repeat superfamily protein | chr2:5637053-5642813 FORWARD LENGTH=848 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 848 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: response to abscisic acid stimulus [IMP]
    RNA splicing, via endonucleolytic cleavage and ligation [IMP]
    primary microRNA processing [IMP]
    long-day photoperiodism, flowering [IMP]
    translation [ISS]
    organ morphogenesis [NAS]
    Molecular Function: RNA cap binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNWKTLLLR IGEKGPEYGT SSDYKDHIET CFGVIRREIE RSGDQVLPFL LQCAEQLPHK  60
   61 IPLYGTLIGL LNLENEDFVQ KLVESVHANF QVALDSGNCN SIRILLRFMT SLLCSKVIQP 120
  121 ASLIVVFETL LSSAATTVDE EKGNPSWQPQ ADFYVICILS SLPWGGSELA EQVPDEIERV 180
  181 LVGIQAYLSI RKNSSTSGLN FFHNGEFESS LAEKDFVEDL LDRIQSLASN GWKLESVPRP 240
  241 HLSFEAQLVA GKFHELRPIK CMEQPSPPSD HSRAYSGKQK HDALTRYPQR IRRLNIFPAN 300
  301 KMEDVQPIDR FVVEEYLLDV LFYLNGCRKE CASYMANLPV TFRYEYLMAE TLFSQILLLP 360
  361 QPPFKTLYYT LVIMDLCKAL PGAFPAVVAG AVRALFEKIS DLDMESRTRL ILWFSHHLSN 420
  421 FQFIWPWEEW AFVLDLPKWA PKRVFVQEIL QREVRLSYWD KIKQSIENAT ALEELLPPKA 480
  481 GPNFMYSLEE GKEKTEEQQL SAELSRKVKE KQTARDMIVW IEETIYPVHG FEVTLTIVVQ 540
  541 TLLDIGSKSF THLVTVLERY GQVFSKLCPD NDKQVMLLSQ VSTYWKNNVQ MTAVAIDRMM 600
  601 GYRLVSNQAI VRWVFSPENV DQFHVSDQPW EILGNALNKT YNRISDLRKD ISNITKNVLV 660
  661 AEKASANARV ELEAAESKLS LVEGEPVLGE NPAKMKRLKS TVEKTGEAEL SLRESLEAKE 720
  721 ALLNRALSET EVLLLLLFQS FLGVLKERLP DPTKVRSVQD LKSIGAEDDK PSAMDVDSEN 780
  781 GNPKKSCEVG EREQWCLSTL GYLTAFTRQY ASEIWPHMEK LESEVFSGED VHPLFLQAIS 840
  841 SALQFPLH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..756] PSI-BLAST 1000.0 CBP80, 80KDa nuclear cap-binding protein
    2 View Details [757..848] deduced N/A Confident ab initio structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle