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Protein Overview: gi|18175722, gi|...

General Information:
Name(s) found: gi|20466015 [NCBI NR]
gi|18175722 [NCBI NR]
gi|15238854 [NCBI NR]
gi|145334771 [NCBI NR]
gi|10177748 [NCBI NR]
Description(s) found:
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  • gi|20466015|gb|AAM20229.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18175722|gb|AAL59916.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15238854|ref|NP_199608.1| nitrogen regulation family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|145334771|ref|NP_001078731.1| nitrogen regulation family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|10177748|dbj|BAB11061.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • (Q9FI41) Emb|CAB87804.1 (Hypothetical protein) [athaliana3702.FASTAC.txt]
  • unknown protein [Arabidopsis thaliana]gi|18175722|gb|AAL59916.1| unknown protein [Arabidopsis thaliana]gi|15238854|ref|NP_199608.1| nitrogen regulation family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Nitrogen regulation family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | nitrogen regulation family protein | chr5:19440646-19442811 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • FAD binding / oxidoreductase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Aldolase-type TIM barrel family protein | chr5:19423420-19425585 FORWARD LENGTH=387 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • tRNA-dihydrouridine synthase OS=Arabidopsis thaliana GN=At5g47970 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 387 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    cytoplasm [IDA]
    phragmoplast [IDA]
    Biological Process: tRNA processing [IEA]
    metabolic process [IEA]
    regulation of nitrogen utilization [ISS]
    oxidation reduction [IEA]
    Molecular Function: tRNA dihydrouridine synthase activity [IEA]
    FAD binding [IEA]
    catalytic activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVSEAYSPP LFSIAPMMGW TDNHYRTLAR LITKHAWLYT EMLAAETIVY QEDNLDSFLA  60
   61 FSPDQHPIVL QIGGRNLENL AKATRLANAY AYDEINFNCG CPSPKVSGRG CFGALLMLDP 120
  121 KFVGEAMSVI AANTNAAVTV KCRIGVDDHD SYNELCDFIH IVSSLSPTKH FIIHSRKALL 180
  181 SGLSPSDNRR IPPLKYEFFF ALLRDFPDLK FTINGGINSV VEADAALRSG AHGVMLGRAV 240
  241 YYNPWHILGH VDTVVYGSPS SGITRRQVLE KYKLYGESVL GKYGKGRPNL RDIVRPLINL 300
  301 FHSESGNGQW KRRTDAALLH CTTLQSFLDE VLPAIPDYVL DSSAVKEATG REDLFADVQR 360
  361 LLPPPYEKES FKALERIPTR PVILDEE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..387] PSI-BLAST 58.39794 Crystal structure of a putative flavin oxidoreductase with flavin

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  2.31793084876503 bayes_pls_golite062009
  • tRNA dihydrouridine synthase activity
    		•  2.08199396870845 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle