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View Structure Prediction Details

Protein: gi|18175722, gi|...
Organism: Arabidopsis thaliana
Length: 387 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18175722, gi|....

Description E-value Query
Range
Subject
Range
gi|46202328 - gi|46202328|ref|ZP_00053405.2| COG0042: tRNA-dihydrouridine synthase [Magnetospirillum magnetotactic...
293.0 [0..2] [341..10]

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Predicted Domain #1
Region A:
Residues: [1-387]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVSEAYSPP LFSIAPMMGW TDNHYRTLAR LITKHAWLYT EMLAAETIVY QEDNLDSFLA  60
   61 FSPDQHPIVL QIGGRNLENL AKATRLANAY AYDEINFNCG CPSPKVSGRG CFGALLMLDP 120
  121 KFVGEAMSVI AANTNAAVTV KCRIGVDDHD SYNELCDFIH IVSSLSPTKH FIIHSRKALL 180
  181 SGLSPSDNRR IPPLKYEFFF ALLRDFPDLK FTINGGINSV VEADAALRSG AHGVMLGRAV 240
  241 YYNPWHILGH VDTVVYGSPS SGITRRQVLE KYKLYGESVL GKYGKGRPNL RDIVRPLINL 300
  301 FHSESGNGQW KRRTDAALLH CTTLQSFLDE VLPAIPDYVL DSSAVKEATG REDLFADVQR 360
  361 LLPPPYEKES FKALERIPTR PVILDEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.39794
Match: 1vhnA
Description: Crystal structure of a putative flavin oxidoreductase with flavin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.31793084876503 bayes_pls_golite062009
tRNA dihydrouridine synthase activity 2.08199396870845 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle