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Protein Overview: gi|25289358, gi|...

General Information:
Name(s) found: gi|7268611 [NCBI NR]
gi|25289358 [NCBI NR]
gi|15236790 [NCBI NR]
Description(s) found:
Found 12 descriptions.
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  • gi|7268611|emb|CAB78820.1| polygalacturonase-like protein [Arabidopsis thaliana] [NCBI NR]
  • pir||E85204 polygalacturonase-like protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15236790|ref|NP_193552.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 414 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENFRYLKFF FFFIFVILSP SEAGNIVDKS SVFLVDVRSF GARANDHRDH TKAFVAAWDK  60
   61 ACKSSSSSVN LIIPRGEFSV GSLRFSGPCT NVSNLTVRVK ASTDLSKYRS GGGWIQFGWI 120
  121 NGLTLTGGGT FDGQGALAWP FNNCTSDSNC KLLPTSLKFV GMNRTVVRRI SSVNSKFFHI 180
  181 ALVECRDFKG TRLNITAPSD SPNTDGIHIE RSSNVYFSRS HIATGDDCVS IGQGNSQITI 240
  241 TSIKCGPGHG ISVGSLGRYP NEKDVNGLVV KDCKISGTTN GIRIKTWANS PGLSAATNMT 300
  301 FENIIMNNVT NPIIIDQSYC PFSSCISNVP SKVELSEIYF KNIRGTSSSL VAVQLHCSRG 360
  361 MPCKKVYLEN VHLDLSSSDG GRKQSSNRGN EAVSSSCRNV RANYIGTQIP PPCH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..414] PSI-BLAST 44.154902 Polygalacturonase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • polygalacturonase activity
    		•  3.63113788404352 bayes_pls_golite062009
  • catalytic activity
    		•  0.67288476528593 bayes_pls_golite062009
  • hydrolase activity
    		•  0.329563804802467 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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    Created and Maintained by: Michael Riffle