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Protein Overview: PPR79_ARATH

General Information:
Name(s) found: PPR79_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|7769859|gb|AAF69537.1|AC008007_12 F12M16.23 [Arabidopsis thaliana] [NCBI NR]
  • gi|75192173|sp|Q9MAG8.1|PPR79_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At1g53330 [NCBI NR]
  • pir||E96573 protein F12M16.23 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15219274|ref|NP_175740.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] [NCBI NR]
  • Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1 [Swiss-Prot]
  • (Q9MAG8) F12M16.23 [athaliana3702.FASTAC.txt]
  • protein F12M16.23 [imported] - Arabidopsis thalianagi|7769859|gb|AAF69537.1| F12M16.23 [Arabidopsis thaliana]gi|15219274|ref|NP_175740.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Pentatricopeptide (PPR) repeat-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:19899695-19901110 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • F12M16.23 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:19896027-19897442 FORWARD LENGTH=471 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 471 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: embryonic development [IMP]
    root development [IMP]
    fruit development [IMP]
    shoot development [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAVKSVSSF RLASLLRREN DPSAAMKLFR NPDPESTNPK RPFRYSLLCY DIIITKLGGS  60
   61 KMFDELDQVL LHLKTDTRIV PTEIIFCNVI NFFGRGKLPS RALHMFDEMP QYRCQRTVKS 120
  121 LNSLLSALLK CGELEKMKER LSSIDEFGKP DACTYNILIH GCSQSGCFDD ALKLFDEMVK 180
  181 KKVKPTGVTF GTLIHGLCKD SRVKEALKMK HDMLKVYGVR PTVHIYASLI KALCQIGELS 240
  241 FAFKLKDEAY EGKIKVDAAI YSTLISSLIK AGRSNEVSMI LEEMSEKGCK PDTVTYNVLI 300
  301 NGFCVENDSE SANRVLDEMV EKGLKPDVIS YNMILGVFFR IKKWEEATYL FEDMPRRGCS 360
  361 PDTLSYRIVF DGLCEGLQFE EAAVILDEML FKGYKPRRDR LEGFLQKLCE SGKLEILSKV 420
  421 ISSLHRGIAG DADVWSVMIP TMCKEPVISD SIDLLLNTVK EDGPLSAMPQ C

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..77] deduced N/A No confident structure predictions are available.
    2 View Details [78..471] PSI-BLAST 41.39794 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle