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Protein Overview: JMJ25_ARATH

General Information:
Name(s) found: JMJ25_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|6466944|gb|AAF13079.1|AC009176_6 hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15231487|ref|NP_187418.1| IBM1 (increase in bonsai methylation 1); histone demethylase(H3-K9 specific) / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana GN=JMJ25 PE=1 SV=1 [Swiss-Prot]
  • (Q9SSE9) MLP3.6 protein [athaliana3702.FASTAC.txt]
  • hypothetical protein [Arabidopsis thaliana]gi|15231487|ref|NP_187418.1| transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Transcription factor jumonji (jmjC) domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: IBM1 | IBM1 (INCREASE IN BONSAI METHYLATION 1); histone demethylase(H3-K9 specific) / transcription factor | chr3:2426154-2432882 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: IBM1 | Transcription factor jumonji (jmjC) domain-containing protein | chr3:2426148-2432876 FORWARD LENGTH=1027 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • MLP3.6 protein OS=Arabidopsis thaliana GN=MLP3.6 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1027 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: flower development [IMP]
    leaf development [IMP]
    histone H3-K9 demethylation [IGI][IMP]
    pollen development [IMP]
    DNA methylation on cytosine [IGI][IMP]
    Molecular Function: transcription factor activity [ISS]
    histone demethylase activity (H3-K9 specific) [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSVEEEGVV RVEEENGRGG LRRHRRVSTK LANYVDPPTD DEEDGGPKRK GKRGGNRAPK  60
   61 KTPKKDEEMQ KNEIDEANRV TGLVKEKRAA TKILNRKDSI IEVGEASGSM PKEVKGIRIG 120
  121 KRKGEIDGEI PTKPGKKPKT TVDPRIIGYR PDNMCHQCQK SDRIVERCQT CNSKRYCHPC 180
  181 LDTWYPLIAK EDVAKKCMFC SSTCNCRACL RLDTKLKGIN SNLIVSEEEK VQASKFILQS 240
  241 LLPHLKGIND EQVAEKEVEA KIYGLKFEEV RPQDAKAFPD ERLYCDICKT SIYDLHRNCK 300
  301 SCSFDICLSC CLEIRNGKAL ACKEDVSWNY INRGLEYEHG QEGKVIEKPA NKLDDKLKDK 360
  361 LDGKPDDKPK GKPKGRPKGK PDDKPKGKLK GKQDDKPDDK PDEKPVNTDH MKYPSLWKAN 420
  421 EAGIITCCCG AGELVLKRLL PDGWISELVN RVEKTAEAGE LLNLPETVLE RCPCSNSDRH 480
  481 IDIDSCNLLK AACREGSEDN YLYSPSVWDV QQDDLKHFQH HWVKGEPVIV RNVLEATSGL 540
  541 SWEPMVMHRA CRQISHVQHG SLKDVVAVDC LDFCEVKVNL HEFFTGYTDG RYDRMGWPLV 600
  601 LKLKDWPPAK VFKDNLPRHA EEFLCSLPLK HYTHPVNGPL NLAVKLPQNC LKPDMGPKTY 660
  661 VASGFAQELG RGDSVTKLHC DMSDAVNILT HISEVPNMQP GIGNLKKKHA EQDLKELYSS 720
  721 VANKEEMMEI LENSRQQVQN VETDDGALWD IFRREDIPKL ESYIEKHHKE FRHLYCCPVS 780
  781 QVVHPIHDQN FYLTRYHIMK LKEEYGIEPW TFNQKLGDAV LIPVGCPHQV RNLKSCNKVA 840
  841 LDFVSPENVS ECLRLTKQYR LLPPNHFAKE DKLGVKKMIV HAVDKALRDL SGEKSPEPEE 900
  901 KKQNMRGPKK GAAKAVAKAL KDLSPSEKKS SEAAEEEISN GIVNAIDKGL KDLPPSEEKS 960
  961 SEAKVEISNG IVSAMDKDLE HISSSEKKST EEEGVKRPNI VRTYERRKKL GSEVTNAYID1020
 1021 RLEMEKM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..404] PSI-BLAST 4.69897 Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor
    2 View Details [405..485] deduced N/A No confident structure predictions are available.
    3 View Details [486..648] MSA 1.581977 View MSA. No confident structure predictions are available.
    4 View Details [649..738] deduced N/A No confident structure predictions are available.
    5 View Details [739..907] Pfam 5.29243 No description for PF02373.14 was found. No confident structure predictions are available.
    6 View Details [908..1027] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle