| Protein: | JMJ25_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 1027 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for JMJ25_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
495.0 | [0..26] | [902..1585] |
|
|
494.0 | [0..26] | [902..1589] |
|
|
494.0 | [0..26] | [902..1589] |
|
|
485.0 | [0..7] | [903..1645] |
|
Region A: Residues: [1-404] |
1 11 21 31 41 51
| | | | | |
1 MDSVEEEGVV RVEEENGRGG LRRHRRVSTK LANYVDPPTD DEEDGGPKRK GKRGGNRAPK 60
61 KTPKKDEEMQ KNEIDEANRV TGLVKEKRAA TKILNRKDSI IEVGEASGSM PKEVKGIRIG 120
121 KRKGEIDGEI PTKPGKKPKT TVDPRIIGYR PDNMCHQCQK SDRIVERCQT CNSKRYCHPC 180
181 LDTWYPLIAK EDVAKKCMFC SSTCNCRACL RLDTKLKGIN SNLIVSEEEK VQASKFILQS 240
241 LLPHLKGIND EQVAEKEVEA KIYGLKFEEV RPQDAKAFPD ERLYCDICKT SIYDLHRNCK 300
301 SCSFDICLSC CLEIRNGKAL ACKEDVSWNY INRGLEYEHG QEGKVIEKPA NKLDDKLKDK 360
361 LDGKPDDKPK GKPKGRPKGK PDDKPKGKLK GKQDDKPDDK PDEK
|
| Detection Method: |  |
| Confidence: | 4.69897 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [405-485] |
1 11 21 31 41 51
| | | | | |
1 PVNTDHMKYP SLWKANEAGI ITCCCGAGEL VLKRLLPDGW ISELVNRVEK TAEAGELLNL 60
61 PETVLERCPC SNSDRHIDID S
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [486-648] |
1 11 21 31 41 51
| | | | | |
1 CNLLKAACRE GSEDNYLYSP SVWDVQQDDL KHFQHHWVKG EPVIVRNVLE ATSGLSWEPM 60
61 VMHRACRQIS HVQHGSLKDV VAVDCLDFCE VKVNLHEFFT GYTDGRYDRM GWPLVLKLKD 120
121 WPPAKVFKDN LPRHAEEFLC SLPLKHYTHP VNGPLNLAVK LPQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [649-738] |
1 11 21 31 41 51
| | | | | |
1 NCLKPDMGPK TYVASGFAQE LGRGDSVTKL HCDMSDAVNI LTHISEVPNM QPGIGNLKKK 60
61 HAEQDLKELY SSVANKEEMM EILENSRQQV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [739-907] |
1 11 21 31 41 51
| | | | | |
1 QNVETDDGAL WDIFRREDIP KLESYIEKHH KEFRHLYCCP VSQVVHPIHD QNFYLTRYHI 60
61 MKLKEEYGIE PWTFNQKLGD AVLIPVGCPH QVRNLKSCNK VALDFVSPEN VSECLRLTKQ 120
121 YRLLPPNHFA KEDKLGVKKM IVHAVDKALR DLSGEKSPEP EEKKQNMRG
|
| Detection Method: | |
| Confidence: | 5.29243 |
| Match: | PF02373.14 |
| Description: | No description for PF02373.14 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [908-1027] |
1 11 21 31 41 51
| | | | | |
1 PKKGAAKAVA KALKDLSPSE KKSSEAAEEE ISNGIVNAID KGLKDLPPSE EKSSEAKVEI 60
61 SNGIVSAMDK DLEHISSSEK KSTEEEGVKR PNIVRTYERR KKLGSEVTNA YIDRLEMEKM 120
121
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
