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Protein Overview: CSCL4_ARATH

General Information:
Name(s) found: CSCL4_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|15233100|ref|NP_188799.1| early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] [NCBI NR]
  • gi|11994398|dbj|BAB02357.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • CSC1-like protein At3g21620 OS=Arabidopsis thaliana GN=At3g21620 PE=2 SV=1 [Swiss-Prot]
  • (Q9LVE4) Gb|AAD36947.1 [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15233100|ref|NP_188799.1| early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Early-responsive to dehydration protein-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | early-responsive to dehydration protein-related / ERD protein-related | chr3:7611051-7614048 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | ERD (early-responsive to dehydration stress) family protein | chr3:7611044-7614041 REVERSE LENGTH=756 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Early-responsive to dehydration stress-related protein OS=Arabidopsis thaliana GN=At3g21620 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 756 amino acids

    Gene Ontology:
    Cellular Component: plasma membrane [IDA]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLTDIGVA ATINILTAFA FFIAFAILRL QPVNDRVYFP KWYLKGLRSS PIKTGGFASK  60
   61 FVNLDFRSYI RFLNWMPQAL RMPEPELIDH AGLDSVVYLR IYLLGLKIFF PIACIAFTVM 120
  121 VPVNWTNSTL DQLKNLTFSD IDKLSISNIP TGSSRFWVHL CMAYVITFWT CFVLQREYKH 180
  181 IASMRLQFLA SEHRRPDQFT VLVRNIPPDP DESVSELVEH FFKVNHPDYY LTYQAVYNAN 240
  241 KLSELVQKRM KLQNWLDYYQ NKHSRNPSKR PLIKIGFLGC WGEEVDAIDH YIEKIEGLTR 300
  301 KISEEKETVM SSTKSLVPAA FVSFKKRWGA VVCSQTQQSR NPTEWLTEWA PEPRDIYWDN 360
  361 LALPYVQLTI RRLVIAVAFF FLTFFFMIPI AFVQTLANIE GIEKAVPFLK PLIEVKTVKS 420
  421 FIQGFLPGIA LKIFLIVLPS ILMLMSKFEG FISKSSLERR CASRYYMFQF INVFLCSIIA 480
  481 GTALQQLDSF LNQSATEIPK TIGVSIPMKA TFFITYIMVD GWAGVAGEIL RLKPLIIYHL 540
  541 KNFFLVKTEK DREEAMDPGT IGFNTGEPQI QLYFILGLVY AAVSPILLPF ILVFFALAYV 600
  601 VYRHQIINVY NQEYESAAAF WPDVHRRVVI ALIVSQLLLM GLLSTKKAAR STPLLFILPV 660
  661 LTIGFHKFCQ GRYQPIFVTY PLQDAMVKDT LERMREPNLN LKTFLQNAYA HPVFKAADNL 720
  721 ANEMVVEEPA PDKTPDLVAT KRGSRRFNSG SAETFT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..193] MSA 1.166982 View MSA. No confident structure predictions are available.
    2 View Details [194..363] FFAS03 1.15 Structural basis for recognition of UUUOH 3'-terminii of nascent RNA pol III transcripts by La autoantigen
    3 View Details [364..546] MSA 7.362995 View MSA. No confident structure predictions are available.
    4 View Details [547..645] MSA 6.366995 View MSA. No confident structure predictions are available.
    5 View Details [646..756] MSA 1.256993 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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