YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSCL4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.92
Transmembrane Helix	7	28	0.91
Cytoplasmic	29	102	0.93
Transmembrane Helix	103	123	0.88
Non-Cytoplasmic	124	155	0.94
Transmembrane Helix	156	175	0.95
Cytoplasmic	176	372	0.99
Transmembrane Helix	373	393	0.92
Non-Cytoplasmic	394	427	0.89
Transmembrane Helix	428	445	0.95
Cytoplasmic	446	464	0.87
Transmembrane Helix	465	484	0.95
Non-Cytoplasmic	485	511	0.84
Transmembrane Helix	512	530	0.81
Cytoplasmic	531	575	0.86
Transmembrane Helix	576	599	0.89
Non-Cytoplasmic	600	623	0.87
Transmembrane Helix	624	645	0.82
Cytoplasmic	646	756	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLTDIGVA ATINILTAFA FFIAFAILRL QPVNDRVYFP KWYLKGLRSS PIKTGGFASK  60
   61 FVNLDFRSYI RFLNWMPQAL RMPEPELIDH AGLDSVVYLR IYLLGLKIFF PIACIAFTVM 120
  121 VPVNWTNSTL DQLKNLTFSD IDKLSISNIP TGSSRFWVHL CMAYVITFWT CFVLQREYKH 180
  181 IASMRLQFLA SEHRRPDQFT VLVRNIPPDP DESVSELVEH FFKVNHPDYY LTYQAVYNAN 240
  241 KLSELVQKRM KLQNWLDYYQ NKHSRNPSKR PLIKIGFLGC WGEEVDAIDH YIEKIEGLTR 300
  301 KISEEKETVM SSTKSLVPAA FVSFKKRWGA VVCSQTQQSR NPTEWLTEWA PEPRDIYWDN 360
  361 LALPYVQLTI RRLVIAVAFF FLTFFFMIPI AFVQTLANIE GIEKAVPFLK PLIEVKTVKS 420
  421 FIQGFLPGIA LKIFLIVLPS ILMLMSKFEG FISKSSLERR CASRYYMFQF INVFLCSIIA 480
  481 GTALQQLDSF LNQSATEIPK TIGVSIPMKA TFFITYIMVD GWAGVAGEIL RLKPLIIYHL 540
  541 KNFFLVKTEK DREEAMDPGT IGFNTGEPQI QLYFILGLVY AAVSPILLPF ILVFFALAYV 600
  601 VYRHQIINVY NQEYESAAAF WPDVHRRVVI ALIVSQLLLM GLLSTKKAAR STPLLFILPV 660
  661 LTIGFHKFCQ GRYQPIFVTY PLQDAMVKDT LERMREPNLN LKTFLQNAYA HPVFKAADNL 720
  721 ANEMVVEEPA PDKTPDLVAT KRGSRRFNSG SAETFT