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Protein Overview: gi|110742615, gi...

General Information:
Name(s) found: gi|8777473 [NCBI NR]
gi|15231947 [NCBI NR]
gi|110742615 [NCBI NR]
Description(s) found:
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  • gi|8777473|dbj|BAA97053.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|15231947|ref|NP_188108.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110742615|dbj|BAE99220.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9LKB4) Genomic DNA, chromosome 3, TAC clone:K15M2 [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15231947|ref|NP_188108.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to unnamed protein product [Vitis vinifera] (GB:CAO39402.1); contains domain PTHR12839 (PTHR12839) | chr3:5013449-5015284 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 17135 Blast hits to 10204 proteins in 644 species: Archae - 47; Bacteria - 1684; Metazoa - 5536; Fungi - 2506; Plants - 1043; Viruses - 361; Other Eukaryotes - 5958 (source: NCBI BLink). | chr3:5013442-5015277 REVERSE LENGTH=611 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative uncharacterized protein At3g14900 OS=Arabidopsis thaliana GN=At3g14900 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 611 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: embryonic development [IMP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSQDLSFSK TLNPSFSFRK SPLNSGVRRI VSVLPAITER NYAFSVKRSE LLLREDGGFR  60
   61 RDVRALAGRS KKKLGGGSSG GRIEGDSDMR KQVKRNAREK SKKLAESLFY RLYNNPDKSR 120
  121 SQILSSHPDK FTEEELEMIG LGYDRMVRFM DKDDPRLRHP YDWFKYGEFG PYSWRGVVVG 180
  181 DPVRGTISDE CVTMIGEVEN HEEFEKIEQH EMNIAFQKRV KELDSNVGLR YFWVFVRHPK 240
  241 WRLSELPWEQ WTLVSEVVVE ADKKQRLDKW NLMGRLGNKS RSLICQCAAW FRPDIVYVKK 300
  301 PVFQCRFEPQ EDFFNSLIPY LNPVTESGFV CEVEDDEGRV ELSTYYGGLC KMLKVRQTAF 360
  361 VDDVVNAYEK LSDEKKSRVL KFLLGNHPNE LLHPYTKEWK AKLEEMELGC DAPDEDEDEI 420
  421 SISGSSEKAE FSEWIEDEAD NDDDDDDDDD DDGEVEEVDD DDNMVVDVEG NVEEDSLEDE 480
  481 IEESDPEEDE RYWEEQFNKA TNNAERMEKL AEMSMVVSDK FYEKQLKALE EREKGEIEGD 540
  541 ELEMRGKKAK VKPEEWKTVG YGRWMKKIKK SRIPPELFLR AAVRPFVYRN LVKEIVLTRH 600
  601 AILEGEIGQK E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..240] deduced N/A No confident structure predictions are available.
    2 View Details [241..325] deduced N/A No confident structure predictions are available.
    3 View Details [326..517] MSA 5.131996 View MSA. No confident structure predictions are available.
    4 View Details [518..611] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle