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Protein Overview: PUB25_ARATH

General Information:
Name(s) found: PUB25_ARATH [Swiss-Prot]
Description(s) found:
Found 15 descriptions.
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  • U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 421 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    Biological Process: response to chitin [IEP]
    Molecular Function: ubiquitin-protein ligase activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR  60
   61 APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA DPTSVRALLS QASAITGTHV 120
  121 SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP 180
  181 ITEPNQFVSI SSDPGRVEFL TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES 240
  241 VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD 300
  301 TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW 360
  361 REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW PDYNSFANSD DFGCSSQVVP 420
  421 F

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..98] PSI-BLAST 10.154902 NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana
    2 View Details [99..161] deduced N/A Confident ab initio structure predictions are available.
    3 View Details [162..421] PSI-BLAST 36.522879 Karyopherin alpha


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle