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Protein Overview: gi|20466624, gi|...

General Information:
Name(s) found: gi|4582430 [NCBI NR]
gi|25350038 [NCBI NR]
gi|22136400 [NCBI NR]
gi|20466624 [NCBI NR]
gi|15227711 [NCBI NR]
Description(s) found:
Found 13 descriptions.
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  • gi|4582430|gb|AAD24816.1| putative nonsense-mediated mRNA decay protein [Arabidopsis thaliana] [NCBI NR]
  • pir||F84452 probable nonsense-mediated mRNA decay protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|22136400|gb|AAM91278.1| putative nonsense-mediated mRNA decay protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20466624|gb|AAM20629.1| putative nonsense-mediated mRNA decay protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15227711|ref|NP_178476.1| nonsense-mediated mRNA decay NMD3 family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 516 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [ISS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP  60
   61 ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN AEFVWTEPHS KRIKVKLTVQ 120
  121 AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI 180
  181 LRHDAASRAI RIQQVDQGID FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY 240
  241 NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA 300
  301 RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT 360
  361 HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE AILIKKCYEE QRERKQKKSR 420
  421 NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM 480
  481 TDGEGAPSVP IEELLADLDL SFEEEDDDDE DDMAAE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..108] MSA 1.035984 View MSA. No confident structure predictions are available.
    2 View Details [109..183] deduced N/A No confident structure predictions are available.
    3 View Details [184..253] MSA 1.036997 View MSA. No confident structure predictions are available.
    4 View Details [254..456] deduced N/A No confident structure predictions are available.
    5 View Details [457..516] MSA 1.015995 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle