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Protein Overview: STI_ARATH

General Information:
Name(s) found: STI_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|8980710|gb|AAF82285.1|AF264023_1 STICHEL [Arabidopsis thaliana] [NCBI NR]
  • gi|20197093|gb|AAC18938.2| similar to prokaryotic DNA polymerase III gamma subunit [Arabidopsis thaliana] [NCBI NR]
  • gi|18395372|ref|NP_565285.1| STI (STICHEL); ATP binding / DNA binding / DNA-directed DNA polymerase [Arabidopsis thaliana] [NCBI NR]
  • Protein STICHEL OS=Arabidopsis thaliana GN=STI PE=1 SV=2 [Swiss-Prot]
  • (O64728) Similar to prokaryotic DNA polymerase III gamma subunit (STICHEL) [athaliana3702.FASTAC.txt]
  • similar to prokaryotic DNA polymerase III gamma subunit [Arabidopsis thaliana]gi|18395372|ref|NP_565285.1| DNA polymerase-related [Arabidopsis thaliana]gi|8980710|gb|AAF82285.1| STICHEL [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DNA polymerase-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: STI | STI (STICHEL); ATP binding / DNA binding / DNA-directed DNA polymerase | chr2:661092-665336 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • similar to prokaryotic DNA polymerase III gamma subunit [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • STICHEL [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • STI (STICHEL) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: STI | AAA-type ATPase family protein | chr2:661093-665337 FORWARD LENGTH=1218 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AAA-type ATPase-like protein OS=Arabidopsis thaliana GN=STI PE=2 SV=2 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1218 amino acids

    Gene Ontology:
    Cellular Component: plasma membrane [IDA]
    Biological Process: trichome branching [IMP]
    trichome differentiation [IMP]
    Molecular Function: DNA binding [IEA]
    ATP binding [IEA]
    DNA-directed DNA polymerase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSRVSDLS KLHLKKELTQ IRKAGRVLRD PGTTSSWKSP LDSSRSVALL ETPASRNGGS  60
   61 SSQFPIRGES STNRRGKEKK VFLYNWKTQK SSSEKSGLAK NGKEEEEEEE DASSWTQASV 120
  121 NDDDDVSDAR NGGDSYRREI QSASMGFRCR DTNLASQGVS KMRKSNVGSC KKKSKKKISS 180
  181 SRLDCLSKYQ PRDDIVARNC NAGSDDTEEE LSNSEDLRKV TGASPLLLKL KQKNWSRSSS 240
  241 RLLRANNRKE DSSCTYNSTP ALSTSSYNMY AVRNPSTVGS WDGTTTSVND GDDELDDNLD 300
  301 LPGRQGCGIP CYWTKKAMKH RGGCRSCCSP SFSDTLRRTG SSILCGSQSV YRRHNRHSSG 360
  361 GYSKQKIACR SAQGVLPLLS YGGDGRGGSS LGTGLSDDEL STNYGELDLE AQSRLDGRRW 420
  421 STSYRSQDGL EAVALDGEEE EGSTPETIRS FSQKYRPMFF EELIGQSIVV QSLMNAVKRS 480
  481 RIAPVYLFQG PRGTGKTSTA RIFSAALNCV ATEEMKPCGY CKECNDFMSG KSKDFWELDG 540
  541 ANKKGADKVR YLLKNLPTIL PRNSSMYKVF VIDECHLLPS KTWLSFLKFL ENPLQKVVFI 600
  601 FITTDLENVP RTIQSRCQKF LFDKLKDSDI VVRLKKIASD ENLDVDLHAL DLIAMNADGS 660
  661 LRDAETMLEQ LSLLGKRITT ALVNELVGVV SDEKLLELLE LALSSDTAET VKRARELLDL 720
  721 GADPIVLMSQ LASLIMDIIA GTYKVVDEKY SNAFFDGRNL TEADMEGLKH ALKLLSEAEK 780
  781 QLRVSNDRST WFTATLLQLG SMPSPGTTHT GSSRRQSSRA TDDDPASVSR EVMAYKQRIG 840
  841 GLHFSKSASP ASVIKRNGNH SHEAKPFSRV IDNNCYKSSS SSQMIESEGS IASHENSIAS 900
  901 TMMLNQRSSE KLNDIWRKCI ERCHSKTLRQ LLYTHGKLIS ISEVEGILVA YIAFGENDIK 960
  961 LRAERFLSSI TNSIEMVLRR SVEVRIILLP ETELLVVPHQ TRKPEMTNKS GHLNNIAGLN1020
 1021 AETDVEVGSS VESRSKLPMQ RIESIIREQR LETAWLQTAD KDTPGSIIRV KPERNQILPQ1080
 1081 EDTYRQTNVA SAISSSGLTT HQWVDELNNE VKLLKIGDNG ELQENLTGTR GQHCPLSPSL1140
 1141 LHDTNFGNNK DNLGGYESGS GRVGCNILFC WNTKKTQRRS KSKQVKGTPV RSRRNRKSRF1200
 1201 SLFNGCAKPR KAEGNIRR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..260] PSI-BLAST 72.09691 N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone; ClpA, an Hsp100 chaperone, AAA+ modules
    2 View Details [261..746] PSI-BLAST 37.39794 Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
    3 View Details [747..865] PSI-BLAST 65.09691 gamma subunit; gamma subunit of DNA polymerase III, N-domain
    4 View Details [866..995] deduced N/A No confident structure predictions are available.
    5 View Details [996..1218] MSA 3.239975 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle