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Protein Overview: gi|15221867, gi|...

General Information:
Name(s) found: gi|3776560 [NCBI NR]
gi|25405750 [NCBI NR]
gi|15221867 [NCBI NR]
Description(s) found:
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  • gi|3776560|gb|AAC64877.1| Similar to gb|U51990 hPrp18 (splicing factor) gene from Homo sapiens. [Arabidopsis thaliana] [NCBI NR]
  • pir||A96588 hypothetical protein T22H22.4 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15221867|ref|NP_175861.1| splicing factor Prp18 family protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9ZVN0) T22H22.4 protein [athaliana3702.FASTAC.txt]
  • Similar to gb|U51990 hPrp18 (splicing factor) gene from Homo sapiens. [Arabidopsis thaliana]gi|25405750|pir||A96588 hypothetical protein T22H22.4 [imported] - Arabidopsis thalianagi|15221867|ref|NP_175861.1| splicing factor Prp18 family protein [Arabido [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Splicing factor Prp18 family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | splicing factor Prp18 family protein | chr1:20395227-20396101 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Similar to gb|U51990 hPrp18 (splicing factor) gene from Homo sapiens. [Arabidopsis thaliana] [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 256 amino acids

    Gene Ontology:
    Cellular Component: spliceosomal complex [IEA][ISS]
    Biological Process: RNA splicing [IEA][ISS]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQGETNDFL RDITELKKRE RSSGLMNDRK RKTSNDDELI GAEKEDLKLL EEANFEDLCD  60
   61 EDKILVFCKK LLLEWKQELE AMENTERRTA IGKQMLATFN QCARYLTPLF HLCRNKCLPA 120
  121 DIRQGLMVMV NCWIKRDYLD ATAQFIKLAI GNAPWPIGVT MVGIHERSAR EKISTSSSVA 180
  181 HIMNNETTRK YLQSVKRLMT FCQRRYSALP SKSIEFNSLA NGSNLHSLLA EERFFAADRE 240
  241 RVSEERLWLM PSLNEI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..256] PSI-BLAST 55.522879 Functional domain of the splicing factor Prp18

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.074040936650541 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle