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View Structure Prediction Details

Protein: gi|15221867, gi|...
Organism: Arabidopsis thaliana
Length: 256 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15221867, gi|....

Description E-value Query
Range
Subject
Range
gi|15293173, gi|... - gi|4587563|gb|AAD25794.1|AC006550_2 Similar to gb|U51990 pre-mRNA-splicing factor hPrp18 from Homo s...
362.0 [0..1] [255..149]

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Predicted Domain #1
Region A:
Residues: [1-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQGETNDFL RDITELKKRE RSSGLMNDRK RKTSNDDELI GAEKEDLKLL EEANFEDLCD  60
   61 EDKILVFCKK LLLEWKQELE AMENTERRTA IGKQMLATFN QCARYLTPLF HLCRNKCLPA 120
  121 DIRQGLMVMV NCWIKRDYLD ATAQFIKLAI GNAPWPIGVT MVGIHERSAR EKISTSSSVA 180
  181 HIMNNETTRK YLQSVKRLMT FCQRRYSALP SKSIEFNSLA NGSNLHSLLA EERFFAADRE 240
  241 RVSEERLWLM PSLNEI

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Detection Method: PSI-BLAST
Confidence: 55.522879
Match: 1dvkA
Description: Functional domain of the splicing factor Prp18
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.074040936650541 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle