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Protein Overview: CP41A_ARATH

General Information:
Name(s) found: CP41A_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|7573443|emb|CAB87759.1| mRNA binding protein precursor-like [Arabidopsis thaliana] [NCBI NR]
  • gi|75311698|sp|Q9LYA9.1|Y3314_ARATH RecName: Full=Uncharacterized protein At3g63140, chloroplastic; Flags: Precursor [NCBI NR]
  • gi|22136252|gb|AAM91204.1| mRNA binding protein precursor-like [Arabidopsis thaliana] [NCBI NR]
  • gi|16649035|gb|AAL24369.1| mRNA binding protein precursor-like [Arabidopsis thaliana] [NCBI NR]
  • gi|16226201|gb|AAL16101.1|AF428269_1 AT3g63140/T20O10_240 [Arabidopsis thaliana] [NCBI NR]
  • gi|15229384|ref|NP_191873.1| CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA); mRNA binding / poly(U) binding [Arabidopsis thaliana] [NCBI NR]
  • pir||T48103 mRNA binding protein CSP41 homolog T20O10.240 [similarity] - Arabidopsis thaliana [NCBI NR]
  • Uncharacterized protein At3g63140, chloroplastic OS=Arabidopsis thaliana GN=At3g63140 PE=1 SV=1 [Swiss-Prot]
  • Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis thaliana GN=CSP41A PE=1 SV=1 [Swiss-Prot]
  • (Q9LYA9) mRNA binding protein-like (AT3g63140/T20O10_240) [athaliana3702.FASTAC.txt]
  • mRNA binding protein precursor-like [Arabidopsis thaliana]gi|7573443|emb|CAB87759.1| mRNA binding protein precursor-like [Arabidopsis thaliana]gi|16649035|gb|AAL24369.1| mRNA binding protein precursor-like [Arabidopsis thaliana]gi|16226201|gb|AAL16101. [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 MRNA-binding protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | mRNA-binding protein, putative | chr3:23337981-23339595 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • mRNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • mRNA binding protein precursor-like [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT3g63140/T20O10_240 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: CSP41A | chloroplast stem-loop binding protein of 41 kDa | chr3:23327006-23328620 REVERSE LENGTH=406 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 406 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA]
    apoplast [IDA]
    chloroplast envelope [IDA]
    plastoglobule [IDA]
    thylakoid [IDA]
    Biological Process: rRNA processing [IGI]
    Molecular Function: mRNA binding [ISS]
    poly(U) RNA binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALSSSSLF FSSKTTSPIS NLLIPPSLHR FSLPSSSSSF SSLSSSSSSS SSLLTFSLRT  60
   61 SRRLSPQKFT VKASSVGEKK NVLIVNTNSG GHAVIGFYFA KELLSAGHAV TILTVGDESS 120
  121 EKMKKPPFNR FSEIVSGGGK TVWGNPANVA NVVGGETFDV VLDNNGKDLD TVRPVVDWAK 180
  181 SSGVKQFLFI SSAGIYKSTE QPPHVEGDAV KADAGHVVVE KYLAETFGNW ASFRPQYMIG 240
  241 SGNNKDCEEW FFDRIVRDRA VPIPGSGLQL TNISHVRDLS SMLTSAVANP EAASGNIFNC 300
  301 VSDRAVTLDG MAKLCAAAAG KTVEIVHYDP KAIGVDAKKA FLFRNMHFYA EPRAAKDLLG 360
  361 WESKTNLPED LKERFEEYVK IGRDKKEIKF ELDDKILEAL KTPVAA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..79] PSI-BLAST 6.69897 No description for 2z5lA was found.
    2 View Details [80..406] PSI-BLAST 73.522879 dTDP-glucose 4,6-dehydratase (RmlB)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  1.26736023026862 bayes_pls_golite062009
  • oxidoreductase activity
    		•  0.68812524232244 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle