YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CP41A_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALSSSSLF FSSKTTSPIS NLLIPPSLHR FSLPSSSSSF SSLSSSSSSS SSLLTFSLRT  60
   61 SRRLSPQKFT VKASSVGEKK NVLIVNTNSG GHAVIGFYFA KELLSAGHAV TILTVGDESS 120
  121 EKMKKPPFNR FSEIVSGGGK TVWGNPANVA NVVGGETFDV VLDNNGKDLD TVRPVVDWAK 180
  181 SSGVKQFLFI SSAGIYKSTE QPPHVEGDAV KADAGHVVVE KYLAETFGNW ASFRPQYMIG 240
  241 SGNNKDCEEW FFDRIVRDRA VPIPGSGLQL TNISHVRDLS SMLTSAVANP EAASGNIFNC 300
  301 VSDRAVTLDG MAKLCAAAAG KTVEIVHYDP KAIGVDAKKA FLFRNMHFYA EPRAAKDLLG 360
  361 WESKTNLPED LKERFEEYVK IGRDKKEIKF ELDDKILEAL KTPVAA

Type	Start	End	Confidence
Signal Peptide	1	51	0.93
N-region	1	42
H-region	43	48
C-region	49	51
Cleavage Site	51	52
Non-Cytoplasmic	52	406	0.99