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Protein Overview: LRP6B_ARATH

General Information:
Name(s) found: LRP6B_ARATH [Swiss-Prot]
Description(s) found:
Found 19 descriptions.
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  • La-related protein 6B OS=Arabidopsis thaliana GN=LARP6B PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 545 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    chloroplast [IEA]
    ribonucleoprotein complex [IEA]
    Biological Process: RNA processing [IEA]
    Molecular Function: nucleic acid binding [ISS]
    RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR  60
   61 TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP IQPHLVPVQN HHPHHRFHQH 120
  121 HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS 180
  181 VSIDSKTGLP EDSIQKIVNQ VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK 240
  241 AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN 300
  301 LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA 360
  361 VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA DVEHEEDDAT TSEQQPIEKQ 420
  421 SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ 480
  481 NHNHNGRGNH HHHHHHQVGT QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV 540
  541 MVQAE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..177] deduced N/A No confident structure predictions are available.
    2 View Details [178..396] PSI-BLAST 37.154902 HNRNP A1 (RBD1,2) FROM HOMO SAPIENS
    3 View Details [397..545] MSA 6.821997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle