| Protein: | LRP6B_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 545 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LRP6B_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
245.0 | [0..135] | [545..45] |
|
Region A: Residues: [1-177] |
1 11 21 31 41 51
| | | | | |
1 MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR 60
61 TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP IQPHLVPVQN HHPHHRFHQH 120
121 HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTET
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [178-396] |
1 11 21 31 41 51
| | | | | |
1 GASVSIDSKT GLPEDSIQKI VNQVEYYFSD LNLATTDHLM RFICKDPEGY VPIHVVASFK 60
61 KIKAVINNNS QLAAVLQNSA KLFVSEDGKK VRRISPITES AIEELQSRII VAENLPEDHC 120
121 YQNLMKIFST VGSVKNIRTC QPQNNGSGAP PAARSAAKSD GTLFSNKVHA FVEYEIVELA 180
181 ERAVTELSEA GNWRSGLKVR LMLKHQTKEP KQGQGRGRK
|
| Detection Method: | |
| Confidence: | 37.154902 |
| Match: | 1ha1A |
| Description: | HNRNP A1 (RBD1,2) FROM HOMO SAPIENS |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [397-545] |
1 11 21 31 41 51
| | | | | |
1 GHDADVEHEE DDATTSEQQP IEKQSDDCSG EWDTHMQEQP IGEDQGNEKA AGQRKGRNRG 60
61 RGKGRGRGQP HQNQNQNNNH SHNQNHNHNG RGNHHHHHHH QVGTQPSNNP MNNMEQPGMG 120
121 KQQPPGPRMP DGTRGFSMGR GKPVMVQAE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
