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Protein Overview: gi|18404660, gi|...

General Information:
Name(s) found: gi|7939565 [NCBI NR]
gi|18404660 [NCBI NR]
Description(s) found:
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  • gi|7939565|dbj|BAA95766.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|18404660|ref|NP_566778.1| myb family transcription factor [Arabidopsis thaliana] [NCBI NR]
  • (Q9LS00) Gb|AAD49976.1 [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|18404660|ref|NP_566778.1| myb family transcription factor [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Myb family transcription factor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | myb family transcription factor | chr3:9414433-9416188 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | myb-like transcription factor family protein | chr3:9413196-9414951 FORWARD LENGTH=357 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Gb|AAD49976.1 OS=Arabidopsis thaliana GN=At3g25790 PE=4 SV=1 [ARATH-contam.fasta]
  • Myb-like transcription factor family protein OS=Arabidopsis thaliana GN=At3g25790 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 357 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: regulation of transcription [TAS]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKNLSNMKN DNQKREKCCE YIEALEEERR KINVFQRELP LCVELVTQAI EAYKREISGT  60
   61 STDNLYGQSE CSEQTTGECG RILDLFIPIK HSSTSIEEEV DDKDDDDEEH QSHETDIDFD 120
  121 DKNMKSEWLK SVQLWNQSDA VVSNNRQDRS QEKTETLVEL IKINDEAAKK NNNIKSPVTT 180
  181 SDGGSGGGGG RRGQRKNRRC WSQELHRRFL NALKQLGGPH VATPKQIRDI MKVDGLTNDE 240
  241 VKSHLQKYRL HARRPSQTTP NNRNSQTQHF VVVGGIWVPQ TNHSTANAVN AVASGETTGI 300
  301 YGPMVSSLPS EWPRHSNFGR KISEDRSRCS NNGFFRCSSP AMSCSTRTKT KDAKIIS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..132] PSI-BLAST 6.221849 NTRC receiver domain
    2 View Details [133..279] PSI-BLAST 18.69897 Arr10-B
    3 View Details [280..357] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • signal transducer activity
    		•  2.07885074402355 bayes_pls_golite062009
  • molecular transducer activity
    		•  2.07885074402355 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.72455852503325 bayes_pls_golite062009
  • two-component response regulator activity
    		•  1.53373140048441 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle