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Protein Overview: PUS7_ARATH

General Information:
Name(s) found: PUS7_ARATH [Swiss-Prot]
Description(s) found:
Found 13 descriptions.
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  • RNA pseudouridine synthase 7 OS=Arabidopsis thaliana GN=At5g51140 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 395 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: pseudouridine synthesis [IEA]
    Molecular Function: pseudouridine synthase activity [ISS][TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRKQQEDDN DDGVEKAVSP VLATTSNTMS TDLLLQSSSK LSQKQDYIFH GGRRHVRPYY  60
   61 FEFISHVNKR WTGKTIVDLF ADEFKGRPRD YYVGAVKSGR IKVDGEIVPV SYIVKSSQKI 120
  121 THFLHRHEPP VMIDDVVILH QEPDVVTVCK PASVPVHPCG QYRKNTIVGI LDAEHDLGTL 180
  181 FPIHRLDRLV SGLLIIARTA AKADFFRQQI EGGMVKKRYI AKVIGVFPED EMIVDANINY 240
  241 NGSEGRSTAE DANSSGDDKK VKGKPACTKF TRIDTNGTHS LVSCEPVTGR THQIRVHLQY 300
  301 TGHPIANDPL YLNQHIDNLE TYIAKRIDAG ERKIVSPDDY VYSSEDFSID PMCTNCPKLI 360
  361 PQGYEEHDEA LWLHCVQYCG TGWEYECPYP SWASL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..73] PSI-BLAST 7.69897 No description for 2uu9D was found.
    2 View Details [74..395] PSI-BLAST 71.154902 Structure of the catalytic domain of 23S rRNA pseudouridine synthase RluD

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • pseudouridine synthase activity
    		•  5.19957135839682 bayes_pls_golite062009
  • intramolecular transferase activity
    		•  3.78688422405974 bayes_pls_golite062009
  • isomerase activity
    		•  2.91720316078381 bayes_pls_golite062009
  • catalytic activity
    		•  2.02180970970004 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.21173188039059 bayes_pls_golite062009
  • DNA binding
    		•  0.950713703876672 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.909704702595901 bayes_pls_golite062009
  • binding
    		•  0.730744558777463 bayes_pls_golite062009
  • RNA binding
    		•  0.706879359688019 bayes_pls_golite062009
  • transferase activity
    		•  0.237728328252954 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle