YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: PUB10_ARATH

General Information:
Name(s) found: PUB10_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|75262229|sp|Q9C9A6.1|PUB10_ARATH RecName: Full=U-box domain-containing protein 10; AltName: Full=Plant U-box protein 10 [NCBI NR]
  • gi|42563127|ref|NP_177258.3| armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • pir||E96734 unknown protein F23N20.1 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|22655468|gb|AAM98326.1| At1g71020/F23N20_1 [Arabidopsis thaliana] [NCBI NR]
  • gi|19715632|gb|AAL91637.1| At1g71020/F23N20_1 [Arabidopsis thaliana] [NCBI NR]
  • gi|12323419|gb|AAG51682.1|AC016972_1 unknown protein; 17861-15581 [Arabidopsis thaliana] [NCBI NR]
  • U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1 [Swiss-Prot]
  • (Q9C9A6) Hypothetical protein (At1g71020/F23N20_1) [athaliana3702.FASTAC.txt]
  • At1g71020/F23N20_1 [Arabidopsis thaliana]gi|19715632|gb|AAL91637.1| At1g71020/F23N20_1 [Arabidopsis thaliana]gi|12323419|gb|AAG51682.1| unknown protein; 17861-15581 [Arabidopsis thaliana]gi|25354708|pir||E96734 unknown protein F23N20.1 [imported] - Ara [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Armadillo/beta-catenin repeat family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | armadillo/beta-catenin repeat family protein / U-box domain-containing protein | chr1:26794487-26796767 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At1g71020/F23N20_1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ubiquitin-protein ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein; 17861-15581 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | ARM repeat superfamily protein | chr1:26790825-26793105 REVERSE LENGTH=628 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 628 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    Biological Process: protein ubiquitination [IEA]
    Molecular Function: ubiquitin-protein ligase activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGAITPDS LIGLIAEINE IPGNFGLFKK DCSDLARRVG LLTHLIEEIR DSSPPSESDA  60
   61 SSSLNSHECD WWSDLVVGLQ AAKRLLSSAT SFQARESSDG AAKRISFQFQ CVTWKLEKAL 120
  121 GDLTYDRYDI SDEVREQVEL ARLQLRRAMQ RYGSLNSKKF SSGLSEPMEK DASSNRKVIE 180
  181 KLESIPETVH SLSDEKKFES PPPWKSSSVS LAFFLSKDGD DERLEKAVTE NSDDSQKSDN 240
  241 LTIPEDFLCP ISLELMKDPA IVSTGQTYER SFIQRWIDCG NLSCPKTQQK LENFTLTPNY 300
  301 VLRSLISQWC TKHNIEQPGG YMNGRTKNSD GSFRDLSGDM SAIRALVCKL SSQSIEDRRT 360
  361 AVSEIRSLSK RSTDNRILIA EAGAIPVLVK LLTSDGDTET QENAVTCILN LSIYEHNKEL 420
  421 IMLAGAVTSI VLVLRAGSME ARENAAATLF SLSLADENKI IIGASGAIMA LVDLLQYGSV 480
  481 RGKKDAATAL FNLCIYQGNK GRAVRAGIVK PLVKMLTDSS SERMADEALT ILSVLASNQV 540
  541 AKTAILRANA IPPLIDCLQK DQPRNRENAA AILLCLCKRD TEKLISIGRL GAVVPLMELS 600
  601 RDGTERAKRK ANSLLELLRK SSRKLGSL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..198] PSI-BLAST 27.0 Crystal structure of the CHIP U-box E3 ubiquitin ligase
    2 View Details [199..628] PSI-BLAST 64.0 Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.02652482814057 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.373576425899935 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle