| Protein: | PUB10_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 628 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB10_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
328.0 | [0..1] | [623..7] |
|
Region A: Residues: [1-198] |
1 11 21 31 41 51
| | | | | |
1 MAGGAITPDS LIGLIAEINE IPGNFGLFKK DCSDLARRVG LLTHLIEEIR DSSPPSESDA 60
61 SSSLNSHECD WWSDLVVGLQ AAKRLLSSAT SFQARESSDG AAKRISFQFQ CVTWKLEKAL 120
121 GDLTYDRYDI SDEVREQVEL ARLQLRRAMQ RYGSLNSKKF SSGLSEPMEK DASSNRKVIE 180
181 KLESIPETVH SLSDEKKF
|
| Detection Method: |  |
| Confidence: | 27.0 |
| Match: | 2c2lA |
| Description: | Crystal structure of the CHIP U-box E3 ubiquitin ligase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.02652482814057 | bayes_pls_golite062009 |
|
Region A: Residues: [199-628] |
1 11 21 31 41 51
| | | | | |
1 ESPPPWKSSS VSLAFFLSKD GDDERLEKAV TENSDDSQKS DNLTIPEDFL CPISLELMKD 60
61 PAIVSTGQTY ERSFIQRWID CGNLSCPKTQ QKLENFTLTP NYVLRSLISQ WCTKHNIEQP 120
121 GGYMNGRTKN SDGSFRDLSG DMSAIRALVC KLSSQSIEDR RTAVSEIRSL SKRSTDNRIL 180
181 IAEAGAIPVL VKLLTSDGDT ETQENAVTCI LNLSIYEHNK ELIMLAGAVT SIVLVLRAGS 240
241 MEARENAAAT LFSLSLADEN KIIIGASGAI MALVDLLQYG SVRGKKDAAT ALFNLCIYQG 300
301 NKGRAVRAGI VKPLVKMLTD SSSERMADEA LTILSVLASN QVAKTAILRA NAIPPLIDCL 360
361 QKDQPRNREN AAAILLCLCK RDTEKLISIG RLGAVVPLME LSRDGTERAK RKANSLLELL 420
421 RKSSRKLGSL
|
| Detection Method: | |
| Confidence: | 64.0 |
| Match: | 1wa5B |
| Description: | Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.373576425899935 | bayes_pls_golite062009 |
