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Protein Overview: SYPC_ARATH

General Information:
Name(s) found: SYPC_ARATH [Swiss-Prot]
Description(s) found:
Found 15 descriptions.
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  • Proline--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana GN=At3g62120 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 530 amino acids

    Gene Ontology:
    Cellular Component: membrane [IDA]
    Biological Process: tRNA aminoacylation for protein translation [IEA][ISS]
    prolyl-tRNA aminoacylation [IEA]
    translation [IEA]
    Molecular Function: nucleotide binding [IEA]
    ATP binding [IEA][ISS]
    aminoacyl-tRNA ligase activity [IEA][ISS]
    proline-tRNA ligase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPSEQKEK VVKEKKEKVK KEKVVKEKVA KASSSGQKKK DVKKETGLGL SVKKDENFGE  60
   61 WYSEVCKQDM IEYYDISGCY ILRPWSMAIW EIMQIFFDAE IKKMKVKNCY FPLFVSPGVL 120
  121 EKEKDHIEGF APEVAWVTKS GKSDLEVPIA IRPTSETVMY PYYSKWIRGH RDLPLKLNQW 180
  181 CNVVRWEFSN PTPFIRSREF LWQEGHTAFA TKAEADEEVL QILELYRRIY EEYLAVPVVK 240
  241 GMKSENEKFA GGLYTTSVEA FIPNTGRGVQ GATSHCLGQN FAKMFEINFE NEKAETEMVW 300
  301 QNSWAYSTRT IGVMIMTHGD DKGLVLPPKV ASVQVVVIPV PYKDANTQGI YDACTATASA 360
  361 LCEAGIRAEE DLRDNYSPGW KYSDWEMKGV PLRIEIGPRD LENDQVRTVR RDNGVKEDIP 420
  421 RGSLVEHVKE LLEKIQQNMY EVAKQKREAC VQEVKTWDEF IKALNEKKLI LAPWCDEEEV 480
  481 ERDVKARTKG ETGAAKTLCS PFDQPELPEG TLCFASGKPA KKWTYWGRSY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..530] PSI-BLAST 95.30103 Prolyl-tRNA synthetase (ProRS) domain; C-terminal domain of ProRS; Prolyl-tRNA synthetase (ProRS)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming carbon-oxygen bonds
    		•  7.20130208252979 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.20130208252979 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.18884532579969 bayes_pls_golite062009
  • ligase activity
    		•  6.46734856052643 bayes_pls_golite062009
  • proline-tRNA ligase activity
    		•  3.48471569615425 bayes_pls_golite062009
  • catalytic activity
    		•  2.36416267096403 bayes_pls_golite062009
  • phenylalanine-tRNA ligase activity
    		•  1.82630084735103 bayes_pls_golite062009
  • serine-tRNA ligase activity
    		•  1.67995723068335 bayes_pls_golite062009
  • threonine-tRNA ligase activity
    		•  1.61348476813499 bayes_pls_golite062009
  • histidine-tRNA ligase activity
    		•  1.44658852946316 bayes_pls_golite062009
  • alanine-tRNA ligase activity
    		•  1.37855221028045 bayes_pls_golite062009
  • lysine-tRNA ligase activity
    		•  1.2286808923607 bayes_pls_golite062009
  • glycine-tRNA ligase activity
    		•  1.22845858760023 bayes_pls_golite062009
  • asparagine-tRNA ligase activity
    		•  0.50755166961092 bayes_pls_golite062009
  • binding
    		•  0.005931666351503 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle