YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: NU50B_ARATH

General Information:
Name(s) found: NU50B_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
SHOW ALL
  • Nuclear pore complex protein NUP50B OS=Arabidopsis thaliana GN=NUP50B PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 465 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: intracellular transport [IEA]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDSDNAIPF SRKRTALKEL SRDNPGLDDD DEDTSALESG TFNTASKEVL ASRRIIRVRR  60
   61 TDRSATAPPA SNPFTGIRLV PFTAPAPSTA AAETTKPLSA GKQETLADGR SDATKETDGD 120
  121 SKEKSDAIDA VGKQETQGDE ISAKTKDIID GGEKEMSEAV NSVEGGGAVN KNEDEIKTTM 180
  181 VTEVAAGEET VKDDNNNSNT VEGSDCVVKD TGGNQTEKEG KEGDGNEDTE KNGDSGALSS 240
  241 FHQHSSSKNA FTGLASTGFS ASSFSFGLVP QEGSTGSGSE QSSFSFGQAN NGNSSLFGAS 300
  301 VATSITTKST ETTTAFPSKQ DVSVETGEEN EKAAFTADSV MFEYLEGGWK ERGKGELKVN 360
  361 ISTTENRKAR LVMRSKGNYR LTLNASLYPE MKLAKMDKKG ITFACVNSVS DAKDGLSTLA 420
  421 LKFKDPTVVE EFRAVIEEHK DSKPSVAEAA APLKTPENSP SAEDA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..224] MSA 4.192996 View MSA. No confident structure predictions are available.
    2 View Details [225..278] deduced N/A No confident structure predictions are available.
    3 View Details [279..465] PSI-BLAST 39.522879 Ran-binding protein 1, Ranbp1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.597587183571285 bayes_pls_golite062009
  • protein binding
    		•  0.29116370406325 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle