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Protein Overview: NCED3_ARATH

General Information:
Name(s) found: NCED3_ARATH [Swiss-Prot]
Description(s) found:
Found 13 descriptions.
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  • 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 599 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast thylakoid membrane [IDA]
    Biological Process: hyperosmotic salinity response [IMP]
    abscisic acid biosynthetic process [ISS]
    response to osmotic stress [IMP]
    response to water deprivation [IMP]
    Molecular Function: 9-cis-epoxycarotenoid dioxygenase activity [IDA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL  60
   61 HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA EGFLVSHEKL HPLPKTADPS 120
  121 VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV 180
  181 KFEHGSASYA CRFTQTNRFV QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP 240
  241 AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV 300
  301 DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ 360
  361 QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK WIDAPDCFCF HLWNAWEEPE 420
  421 TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM 480
  481 VNRNMLGRKT KFAYLALAEP WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE 540
  541 EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..69] MSA 2.045995 View MSA. No confident structure predictions are available.
    2 View Details [70..599] PSI-BLAST 123.0 Crystal structure of apocarotenoid cleavage oxygenase from Synechocystis, native enzyme


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.77

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle