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Protein Overview: SYNC2_ARATH

General Information:
Name(s) found: SYNC2_ARATH [Swiss-Prot]
Description(s) found:
Found 13 descriptions.
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  • Asparagine--tRNA ligase, cytoplasmic 2 OS=Arabidopsis thaliana GN=SYNC2 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 638 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    mitochondrion [IDA]
    Biological Process: asparaginyl-tRNA aminoacylation [ISS]
    Molecular Function: asparagine-tRNA ligase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESHGKTHQK EHDNDLSPKP ITLSKYSKRV ELKTLLDRSD RGAGLAGKRV VIGGWVKSAR  60
   61 AVKKNSPPPP LPVVAAPSPS SGGDQAHTTA NIRCTEIIQS KMNIFKRFFD VLSGGGKTYP 120
  121 IFDKTELAGQ KAVPPPEYVF YFLISDGSSI SSLQVVVDSA LSTVPATQLM ALGTCIVAEG 180
  181 VLRLPLAASA KHVIELEAEK LLHVGTVDPE KYPLSKKQLP LHMLRDFSHF RPRTTTVGSV 240
  241 TRVHSALTLA SHTFLQYHGF QYVQVPVITT TTGFGEMFRV TTLLGKTDDK EEKKPPVQEK 300
  301 DGFSIDTVKA VIKEKTRLID HLKRSDSNRE TVVAAVHDLK KTNDLASQIE MKQKSKTGTL 360
  361 VKPEKLDFSK DFFGRDTYLT ASGRFHLESY ASALGKVYTF GPRFIADKID NARHLAEKWN 420
  421 VETEMAFAEL DDAMDCADEY FKFLCKYVLE NRDEDMKFIS KRVDKTITTR LEATASSSLL 480
  481 RFSYTEVISL LQKATTTKFE TKPEWGVALT TEHLSYLTDE IYKGPVIVHT YPKAIKQFYV 540
  541 RLNDDKKTVA AFDLVVPKVG VVITGSQNEE RFEILDARIG ESGFTREKFE WYLDLRRHGT 600
  601 VKHSGISLSM EQMLLYATGL PDIKDAIPFP RSWGKANN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..106] FFAS03 1.3 Lysyl-tRNA synthetase (LysRS)
    2 View Details [107..638] PSI-BLAST 129.0 Aspartyl-tRNA synthetase (AspRS); Prokaryotic AspRS, insert domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming carbon-oxygen bonds
    		•  2.74078236174851 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  2.74078236174851 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  2.7278767226117 bayes_pls_golite062009
  • ligase activity
    		•  2.0946092938039 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.45331399659589 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.29373500798813 bayes_pls_golite062009
  • structural molecule activity
    		•  1.03774215013842 bayes_pls_golite062009
  • binding
    		•  0.819455487357477 bayes_pls_golite062009
  • DNA binding
    		•  0.732939214265147 bayes_pls_golite062009
  • translation regulator activity
    		•  0.515944241286305 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.469391077412475 bayes_pls_golite062009
  • aspartate-tRNA ligase activity
    		•  0.0258496208950199 bayes_pls_golite062009
    2
    Term Confidence Notes
  • ligase activity, forming carbon-oxygen bonds
    		•  7.20130208252979 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.20130208252979 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.18884532579969 bayes_pls_golite062009
  • ligase activity
    		•  6.46734856052643 bayes_pls_golite062009
  • asparagine-tRNA ligase activity
    		•  4.88411901093713 bayes_pls_golite062009
  • catalytic activity
    		•  2.36416267096403 bayes_pls_golite062009
  • phenylalanine-tRNA ligase activity
    		•  1.82630084735103 bayes_pls_golite062009
  • serine-tRNA ligase activity
    		•  1.67995723068335 bayes_pls_golite062009
  • threonine-tRNA ligase activity
    		•  1.61348476813499 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.48826676464117 bayes_pls_golite062009
  • histidine-tRNA ligase activity
    		•  1.44658852946316 bayes_pls_golite062009
  • alanine-tRNA ligase activity
    		•  1.37855221028045 bayes_pls_golite062009
  • lysine-tRNA ligase activity
    		•  1.2286808923607 bayes_pls_golite062009
  • glycine-tRNA ligase activity
    		•  1.22845858760023 bayes_pls_golite062009
  • structural molecule activity
    		•  1.20191382777151 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle