| Protein: | SYNC2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 638 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYNC2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
471.0 | [0..108] | [636..2] |
|
Region A: Residues: [1-106] |
1 11 21 31 41 51
| | | | | |
1 MESHGKTHQK EHDNDLSPKP ITLSKYSKRV ELKTLLDRSD RGAGLAGKRV VIGGWVKSAR 60
61 AVKKNSPPPP LPVVAAPSPS SGGDQAHTTA NIRCTEIIQS KMNIFK
|
| Detection Method: |  |
| Confidence: | 1.3 |
| Match: | 1e1oA |
| Description: | Lysyl-tRNA synthetase (LysRS) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ligase activity, forming carbon-oxygen bonds | 2.74078236174851 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 2.74078236174851 | bayes_pls_golite062009 |
| aminoacyl-tRNA ligase activity | 2.7278767226117 | bayes_pls_golite062009 |
| ligase activity | 2.0946092938039 | bayes_pls_golite062009 |
| nucleic acid binding | 1.45331399659589 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.29373500798813 | bayes_pls_golite062009 |
| structural molecule activity | 1.03774215013842 | bayes_pls_golite062009 |
| binding | 0.819455487357477 | bayes_pls_golite062009 |
| DNA binding | 0.732939214265147 | bayes_pls_golite062009 |
| translation regulator activity | 0.515944241286305 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.469391077412475 | bayes_pls_golite062009 |
| aspartate-tRNA ligase activity | 0.0258496208950199 | bayes_pls_golite062009 |
|
Region A: Residues: [107-638] |
1 11 21 31 41 51
| | | | | |
1 RFFDVLSGGG KTYPIFDKTE LAGQKAVPPP EYVFYFLISD GSSISSLQVV VDSALSTVPA 60
61 TQLMALGTCI VAEGVLRLPL AASAKHVIEL EAEKLLHVGT VDPEKYPLSK KQLPLHMLRD 120
121 FSHFRPRTTT VGSVTRVHSA LTLASHTFLQ YHGFQYVQVP VITTTTGFGE MFRVTTLLGK 180
181 TDDKEEKKPP VQEKDGFSID TVKAVIKEKT RLIDHLKRSD SNRETVVAAV HDLKKTNDLA 240
241 SQIEMKQKSK TGTLVKPEKL DFSKDFFGRD TYLTASGRFH LESYASALGK VYTFGPRFIA 300
301 DKIDNARHLA EKWNVETEMA FAELDDAMDC ADEYFKFLCK YVLENRDEDM KFISKRVDKT 360
361 ITTRLEATAS SSLLRFSYTE VISLLQKATT TKFETKPEWG VALTTEHLSY LTDEIYKGPV 420
421 IVHTYPKAIK QFYVRLNDDK KTVAAFDLVV PKVGVVITGS QNEERFEILD ARIGESGFTR 480
481 EKFEWYLDLR RHGTVKHSGI SLSMEQMLLY ATGLPDIKDA IPFPRSWGKA NN
|
| Detection Method: | |
| Confidence: | 129.0 |
| Match: | 1c0aA |
| Description: | Aspartyl-tRNA synthetase (AspRS); Prokaryotic AspRS, insert domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ligase activity, forming carbon-oxygen bonds | 7.20130208252979 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 7.20130208252979 | bayes_pls_golite062009 |
| aminoacyl-tRNA ligase activity | 7.18884532579969 | bayes_pls_golite062009 |
| ligase activity | 6.46734856052643 | bayes_pls_golite062009 |
| asparagine-tRNA ligase activity | 4.88411901093713 | bayes_pls_golite062009 |
| catalytic activity | 2.36416267096403 | bayes_pls_golite062009 |
| phenylalanine-tRNA ligase activity | 1.82630084735103 | bayes_pls_golite062009 |
| serine-tRNA ligase activity | 1.67995723068335 | bayes_pls_golite062009 |
| threonine-tRNA ligase activity | 1.61348476813499 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.48826676464117 | bayes_pls_golite062009 |
| histidine-tRNA ligase activity | 1.44658852946316 | bayes_pls_golite062009 |
| alanine-tRNA ligase activity | 1.37855221028045 | bayes_pls_golite062009 |
| lysine-tRNA ligase activity | 1.2286808923607 | bayes_pls_golite062009 |
| glycine-tRNA ligase activity | 1.22845858760023 | bayes_pls_golite062009 |
| structural molecule activity | 1.20191382777151 | bayes_pls_golite062009 |
