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Protein Overview: SYP52_ARATH

General Information:
Name(s) found: SYP52_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|79321486|ref|NP_001031301.1| SYP52 (SYNTAXIN OF PLANTS 52); SNAP receptor [Arabidopsis thaliana] [NCBI NR]
  • gi|29824261|gb|AAP04091.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|28393106|gb|AAO41986.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|28380159|sp|Q94KK7.1|SYP52_ARATH RecName: Full=Syntaxin-52; Short=AtSYP52 [NCBI NR]
  • gi|18412435|ref|NP_565213.1| SYP52 (SYNTAXIN OF PLANTS 52); SNAP receptor [Arabidopsis thaliana] [NCBI NR]
  • gi|13811646|gb|AAK40224.1|AF355756_1 syntaxin of plants 52 [Arabidopsis thaliana] [NCBI NR]
  • Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 SV=1 [Swiss-Prot]
  • (Q94KK7) Syntaxin 52 (AtSYP52) [Swiss-Prot]
  • unknown protein [Arabidopsis thaliana]gi|28393106|gb|AAO41986.1| unknown protein [Arabidopsis thaliana]gi|28380159|sp|Q94KK7|SY52_ARATH Syntaxin 52 (AtSYP52)gi|13811646|gb|AAK40224.1| syntaxin of plants 52 [Arabidopsis thaliana]gi|18412435|ref|NP_5652 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Syntaxin 52 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATSYP52, SYP52 | SYP52 (SYNTAXIN OF PLANTS 52) | chr1:29951957-29953197 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • SYP52 (SYNTAXIN OF PLANTS 52) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • syntaxin of plants 52 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Syntaxin-52 (AtSYP52) [nr-271106-contam.fasta]
  • | Symbols: SYP52, ATSYP52 | syntaxin of plants 52 | chr1:29947064-29948304 FORWARD LENGTH=233 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 233 amino acids

    Gene Ontology:
    Cellular Component: endosome membrane [NAS][TAS]
    vacuole [IDA]
    Biological Process: vesicle-mediated transport [TAS]
    Molecular Function: SNAP receptor activity [TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSDPWMR EYNEALKLSE DINGMMSERN ASGLTGPDAQ RRASAIRRKI TILGTRLDSL  60
   61 QSLLVKVPGK QHVSEKEMNR RKDMVGNLRS KTNQVASALN MSNFANRDSL FGTDLKPDDA 120
  121 INRVSGMDNQ GIVVFQRQVM REQDEGLEKL EETVMSTKHI ALAVNEELTL QTRLIDDLDY 180
  181 DVDITDSRLR RVQKSLALMN KSMKSGCSCM SMLLSVLGIV GLALVIWLLV KYL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..233] PSI-BLAST 24.221849 Syntaxin 1A N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.068037611730119 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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